{"id":"W3134232995","doi":"10.1186/s42523-021-00123-2","title":"Effect of maternal separation and transportation stress on the bovine upper respiratory tract microbiome and the immune response to resident opportunistic pathogens","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Health Authority; University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"","keywords":"Weaning; Microbiome; Bovine respiratory disease; Biology; Respiratory tract; Immune system; Respiratory system; Immunology; Antibody; Physiology; Microbiology; Animal science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003666509,0.0003703227,0.0003857774,0.0001855662,0.0002930435,0.0004978654,0.0002225504,0.0002942732,0.001065112],"category_scores_gemma":[0.0004505054,0.0001548899,0.0003042238,0.0001529454,0.0003562598,0.0002283146,0.0003723343,0.0007077637,0.00008592598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009544952,"about_ca_system_score_gemma":0.0005394117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005044459,"about_ca_topic_score_gemma":0.01103671,"domain_scores_codex":[0.9995733,0.00009318183,0.00002163486,0.0001074644,0.00008987809,0.0001145574],"domain_scores_gemma":[0.9993049,0.0001385594,0.0002358863,0.00002892288,0.00007765422,0.0002140361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01065066,0.001074508,0.1137107,0.0002630238,0.000206252,0.0002719205,0.0008945363,0.0001796623,0.8607166,0.00006537123,0.0001722984,0.01179448],"study_design_scores_gemma":[0.00004958872,0.01410384,0.9209708,0.00004732014,0.0002018147,0.0001975433,0.001168831,0.0005076573,0.06176008,0.00005912982,0.0009057571,0.00002771118],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999334,0.0002732841,0.0001365981,0.00002908444,0.000008226455,0.00000624093,0.0001017892,0.000002129017,0.0001086239],"genre_scores_gemma":[0.9985856,0.0002225587,0.0003476983,0.00007459335,0.00000780986,0.00002986038,0.000225425,0.000002582982,0.000503817],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005044459,"threshold_uncertainty_score":0.01003021,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008746888229860448,"score_gpt":0.2733684328816612,"score_spread":0.2646215446518007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}