{"id":"W3134232995","doi":"10.1186/s42523-021-00123-2","title":"Effect of maternal separation and transportation stress on the bovine upper respiratory tract microbiome and the immune response to resident opportunistic pathogens","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Health Authority; University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"","keywords":"Weaning; Microbiome; Bovine respiratory disease; Biology; Respiratory tract; Immune system; Respiratory system; Immunology; Antibody; Physiology; Microbiology; Animal science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000960548,0.0001848748,0.0002330038,0.00006124564,0.0001578761,0.00004448938,0.0001146643,0.0001138922,0.00002495933],"category_scores_gemma":[0.00007280413,0.0001180563,0.00008219348,0.0001155288,0.0001798858,0.000005625232,0.00004354438,0.0001005652,0.00000568043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001599437,"about_ca_system_score_gemma":0.0001029676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004419157,"about_ca_topic_score_gemma":0.00005535205,"domain_scores_codex":[0.9985029,0.0005429843,0.0003367963,0.0003384479,0.00007051764,0.0002083981],"domain_scores_gemma":[0.9992925,0.0001307457,0.0001259526,0.0003025979,0.00008045817,0.00006776612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006773516,0.00003623282,0.001780983,0.00009003271,0.00003744515,0.00001620218,0.0002348272,8.421409e-7,0.9904225,0.0001327939,0.0002768449,0.0001978021],"study_design_scores_gemma":[0.001201202,0.001608465,0.2063123,0.00007104855,0.00005134247,0.00005421736,0.0000760883,0.000001541797,0.7876434,0.000003375117,0.002861484,0.0001155986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960613,0.001376481,0.00001747393,0.001529381,0.00005764956,0.0004351521,0.0005033212,0.000005518979,0.00001376859],"genre_scores_gemma":[0.9987434,0.0001382281,0.00003721958,0.0006076039,0.0000458818,0.00001825259,0.000164276,0.00002084378,0.0002242814],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2045313,"threshold_uncertainty_score":0.4814194,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008746888229860448,"score_gpt":0.2733684328816612,"score_spread":0.2646215446518007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}