{"id":"W3134255207","doi":"10.1093/gbe/evab036","title":"De Novo Whole-Genome Assembly of the Swede Midge (<i>Contarinia nasturtii</i>), a Specialist of Brassicaceae, Using Linked-Read Sequencing","year":2021,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics, phytochemicals, and oxidative stress","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"National Institutes of Health","keywords":"Biology; Brassicaceae; Cecidomyiidae; Glucosinolate; Midge; Genome; Botany; Drosophila melanogaster; Myrosinase; Gall; Genetics; Brassica; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007392368,0.001530783,0.001415797,0.001862223,0.001199269,0.001728886,0.0008729962,0.00110189,0.002773857],"category_scores_gemma":[0.001525892,0.0008431801,0.002122903,0.002535642,0.000361272,0.0006998162,0.0008734946,0.001823954,0.00264961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007780548,"about_ca_system_score_gemma":0.001999361,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01199211,"about_ca_topic_score_gemma":0.02946674,"domain_scores_codex":[0.9995083,0.00003682561,0.00003561566,0.0002500168,0.0001178896,0.00005144389],"domain_scores_gemma":[0.999294,0.0001691283,0.0001420061,0.0000611961,0.0002364132,0.0000972004],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001543554,0.0001909553,0.01088514,0.004329741,0.0006935253,0.0018483,0.0018676,0.006272602,0.8889519,0.001646552,0.02095,0.06082024],"study_design_scores_gemma":[0.0007627776,0.001232532,0.2647479,0.001486556,0.002567552,0.002852012,0.001871267,0.0546761,0.1884304,0.005148949,0.4756117,0.0006122308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3524973,0.00740685,0.166071,0.0008157557,0.0006622652,0.001186451,0.4463464,0.01114161,0.01387232],"genre_scores_gemma":[0.1393276,0.002496058,0.2104094,0.0003717879,0.0001036548,0.0006914661,0.6363789,0.003328322,0.006892823],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01199211,"threshold_uncertainty_score":0.02384466,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01931037417176196,"score_gpt":0.2586954598243477,"score_spread":0.2393850856525858,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}