{"id":"W3134255207","doi":"10.1093/gbe/evab036","title":"De Novo Whole-Genome Assembly of the Swede Midge (<i>Contarinia nasturtii</i>), a Specialist of Brassicaceae, Using Linked-Read Sequencing","year":2021,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics, phytochemicals, and oxidative stress","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"National Institutes of Health","keywords":"Biology; Brassicaceae; Cecidomyiidae; Glucosinolate; Midge; Genome; Botany; Drosophila melanogaster; Myrosinase; Gall; Genetics; Brassica; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001945276,0.00016106,0.0002639124,0.0000291758,0.0001196759,0.000008999907,0.0001851354,0.0002706101,0.00001124527],"category_scores_gemma":[0.0001117994,0.0001407715,0.0001209833,0.0001138938,0.0003440544,0.000005672348,0.0002320854,0.0001264445,0.000001119241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009405841,"about_ca_system_score_gemma":0.0003352674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00013676,"about_ca_topic_score_gemma":0.0002219447,"domain_scores_codex":[0.9988426,0.0001433656,0.0003236443,0.0003539796,0.00005733754,0.0002790713],"domain_scores_gemma":[0.9991934,0.00001901074,0.0002287954,0.0003270971,0.0001704989,0.00006119759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005920711,0.00003686655,0.0311627,0.00003889569,0.00008471165,0.000001142777,0.0001397645,0.00009738328,0.9679565,0.0003349258,0.000008044066,0.00007988467],"study_design_scores_gemma":[0.0005111815,0.0001177753,0.5394355,0.00002754564,0.00006551241,0.00005844635,0.0002364968,0.00003692423,0.4542161,0.0005648237,0.004532502,0.0001972232],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929873,0.003346901,0.00263394,0.0001063494,0.000172094,0.0001308512,0.0002299225,0.000004395507,0.0003881895],"genre_scores_gemma":[0.9979685,0.0001394055,0.001044836,0.0001157355,0.000338897,0.000004625841,0.0001926855,0.00001294976,0.0001823409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5137404,"threshold_uncertainty_score":0.5740497,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01931037417176196,"score_gpt":0.2586954598243477,"score_spread":0.2393850856525858,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}