{"id":"W3134401478","doi":"10.1016/j.fawpar.2021.e00115","title":"CryptoGenotyper: A new bioinformatics tool for rapid Cryptosporidium identification","year":2021,"lang":"en","type":"article","venue":"Food and Waterborne Parasitology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada; University of Georgia","keywords":"Cryptosporidium; Sanger sequencing; Biology; Genotyping; Computational biology; Ribosomal RNA; Cryptosporidium parvum; UniProt; Identification (biology); Genetics; Sequence database; DNA sequencing; Gene; Genotype; Microbiology; Feces","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00244752,0.002629978,0.001893398,0.003534571,0.0009817048,0.001572381,0.002243147,0.001129264,0.00809321],"category_scores_gemma":[0.003418627,0.0009490683,0.001230515,0.002234162,0.0004336503,0.001817275,0.001695125,0.001722994,0.007160141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006938034,"about_ca_system_score_gemma":0.001580707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002002701,"about_ca_topic_score_gemma":0.00249222,"domain_scores_codex":[0.998333,0.0002888364,0.0001690644,0.0004423198,0.0006270606,0.0001395968],"domain_scores_gemma":[0.998648,0.0004673077,0.0002324504,0.0001362682,0.0003261136,0.0001898324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004028682,0.0006579553,0.01633336,0.003383072,0.0007971797,0.001551368,0.0008823151,0.008775997,0.1673227,0.005912832,0.2929964,0.4973582],"study_design_scores_gemma":[0.001747321,0.001039649,0.02969954,0.0006173061,0.0004616263,0.003906759,0.0003154813,0.2998982,0.16123,0.01266967,0.4876767,0.0007376806],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.02781687,0.002800417,0.4453134,0.0008983613,0.0004616048,0.0009067197,0.0558421,0.4592354,0.006725118],"genre_scores_gemma":[0.08312128,0.001584946,0.7769452,0.001484072,0.0001675523,0.001820171,0.114098,0.01362361,0.007155077],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.00809321,"threshold_uncertainty_score":0.02707446,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01362304156109643,"score_gpt":0.261674943550686,"score_spread":0.2480519019895896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}