{"id":"W3134661075","doi":"10.1093/jcag/gwab002.039","title":"A41 LINKING THE APPENDIX MICROBIOME WITH INFLAMMATORY BOWEL DISEASES","year":2021,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Metagenomics; Inflammatory bowel disease; Biology; Cecum; Appendix; Ulcerative colitis; Pathogenesis; Microbiome; Microbiology; Crohn's disease; Shotgun sequencing; Virulence; Disease; Immunology; Bioinformatics; Medicine; Pathology; Genetics; Gene; DNA sequencing; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002816246,0.0003911429,0.0004138521,0.0009138663,0.0004016972,0.0008771064,0.0001266637,0.000468837,0.00442651],"category_scores_gemma":[0.000685888,0.0001930375,0.0004781129,0.001013238,0.0002309766,0.0003047283,0.0007389551,0.0005211626,0.0006951129],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002144446,"about_ca_system_score_gemma":0.0002844217,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00112127,"about_ca_topic_score_gemma":0.0009424085,"domain_scores_codex":[0.9996901,0.00006968027,0.00002775022,0.00008321109,0.00006741648,0.00006181093],"domain_scores_gemma":[0.9994325,0.00007753936,0.0002660932,0.00003021153,0.00009719801,0.00009644796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00126274,0.0001511135,0.5506114,0.001170294,0.0004663337,0.001721332,0.0004383978,0.0002886447,0.3935096,0.0004470911,0.001391176,0.04854181],"study_design_scores_gemma":[0.00001344746,0.0004491264,0.9771305,0.0002036361,0.0002008263,0.002930849,0.0006303135,0.0005023273,0.008920594,0.0005252553,0.008471557,0.00002154629],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9805629,0.01175755,0.00193933,0.000544032,0.0001175214,0.00003314381,0.002288404,0.00005061937,0.002706556],"genre_scores_gemma":[0.9908587,0.003335753,0.002694441,0.0003090508,0.00009053087,0.00002523931,0.001452238,0.00001479221,0.00121922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00442651,"threshold_uncertainty_score":0.01480818,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003000526180096083,"score_gpt":0.1864635746737142,"score_spread":0.1834630484936181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}