{"id":"W3134757501","doi":"10.21203/rs.3.rs-257679/v1","title":"Plasmids facilitate pathogenicity, not cooperation, in bacteria","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Pathogenicity; Plasmid; Pathogenicity island; Bacteria; Biology; Genetics; Computational biology; Microbiology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004203945,0.0002616534,0.0002757044,0.0006732736,0.0004284132,0.0007013124,0.000145388,0.0004948016,0.002590457],"category_scores_gemma":[0.001622731,0.0001143507,0.0002070983,0.0005334864,0.0008294378,0.0007325194,0.0007398874,0.0003936167,0.0004381738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000382266,"about_ca_system_score_gemma":0.0004356204,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003821489,"about_ca_topic_score_gemma":0.0002553168,"domain_scores_codex":[0.9996904,0.00007985007,0.00001553651,0.00004367981,0.00009630499,0.00007431604],"domain_scores_gemma":[0.9987019,0.0006471788,0.0003279739,0.00008901717,0.0001123533,0.0001214203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005583086,0.0002121747,0.07775198,0.0007350651,0.00009245162,0.001779805,0.0007430181,0.003857493,0.8584564,0.01415999,0.0006354977,0.04101785],"study_design_scores_gemma":[0.0002690635,0.003161911,0.4025722,0.0001940387,0.0003148516,0.01508802,0.003878135,0.02317634,0.4624709,0.06388811,0.02486174,0.0001246312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926969,0.0007170226,0.003809272,0.0002211242,0.00001695349,0.00001124923,0.00004976074,0.00004047754,0.002437166],"genre_scores_gemma":[0.9986894,0.0001913693,0.0006560194,0.00001801795,0.00000707313,0.000003591889,0.00004245315,0.000002691843,0.0003894686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002590457,"threshold_uncertainty_score":0.008665919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07602643810638682,"score_gpt":0.384884935417021,"score_spread":0.3088584973106341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}