{"id":"W3134876320","doi":"10.1101/2021.03.08.434416","title":"DNA methylation in <i>Ensifer</i> species during free-living growth and during nitrogen-fixing symbiosis with <i>Medicago</i> spp.","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dell’Istruzione, dell’Università e della Ricerca; Office of Science; Agence Nationale de la Recherche; Joint Genome Institute; Teagasc; U.S. Department of Energy","keywords":"Biology; DNA methylation; Methylation; Endoreduplication; Genetics; Cellular differentiation; Genome; Epigenetics; Cell cycle; Histone; Replicon; Cell biology; DNA; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001157732,0.0001866165,0.0002088682,0.0003759203,0.0002494358,0.0002650336,0.0001724766,0.0002177023,0.0006184542],"category_scores_gemma":[0.0001596115,0.0001555101,0.000125481,0.00022759,0.0002006396,0.0001725015,0.000266487,0.0002375637,0.0002020485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003166904,"about_ca_system_score_gemma":0.0001279174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003861243,"about_ca_topic_score_gemma":0.004690962,"domain_scores_codex":[0.9999138,0.00001009454,0.000004541911,0.00003839908,0.00001127773,0.00002188387],"domain_scores_gemma":[0.9998507,0.00002517183,0.00005244678,0.00001119311,0.00002415131,0.00003623312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009754352,0.000005080237,0.002338918,0.00001077972,0.000003506077,0.00001467541,0.00006805875,0.000016464,0.9970371,0.0000121906,0.000008067496,0.0003876749],"study_design_scores_gemma":[0.0000115476,0.0003864889,0.6637343,0.00001008079,0.00003495992,0.0002489915,0.0005762326,0.0008045742,0.3321087,0.00007615805,0.001983817,0.00002409091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987468,0.0001363881,0.0002563371,0.00001090386,0.000001989198,0.000004388429,0.0004502315,0.00001485799,0.0003779831],"genre_scores_gemma":[0.9971226,0.00007819982,0.0004631256,0.00002207661,0.000002078641,0.00001254893,0.001199304,0.00001413743,0.00108601],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003861243,"threshold_uncertainty_score":0.007677555,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0083365551850978,"score_gpt":0.1742123696686421,"score_spread":0.1658758144835443,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}