{"id":"W3135048480","doi":"10.1002/pro.4057","title":"Structural and functional study of <i>Legionella pneumophila</i> effector RavA","year":2021,"lang":"en","type":"article","venue":"Protein Science","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Arbutus Biopharma (Canada); University of Saskatchewan","funders":"Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Research Council Canada; Canada Foundation for Innovation; University of Saskatchewan; Canadian Light Source","keywords":"Legionella pneumophila; Effector; Biology; Phagosome; Legionella; Cell biology; Microbiology; Intracellular parasite; Secretion; Vacuole; Intracellular; Bacteria; Biochemistry; Genetics; Cytoplasm","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002731927,0.00007434437,0.00008525427,0.00003773644,0.000160748,0.00003702895,0.0001438926,0.00003156038,0.000005418138],"category_scores_gemma":[0.0001383896,0.0000613882,0.0000213321,0.0002760763,0.0003566775,0.000007662764,0.0002685603,0.00006406919,0.000002571066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006648752,"about_ca_system_score_gemma":0.0001970327,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000257542,"about_ca_topic_score_gemma":0.00001368222,"domain_scores_codex":[0.9989458,0.00004592564,0.0001075477,0.0003712311,0.0003469713,0.0001825555],"domain_scores_gemma":[0.9994291,0.000008588777,0.00003673453,0.0002373763,0.0002067922,0.00008141108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003096801,0.00004705743,0.008104695,0.00001384668,0.000006067906,0.000005739608,0.00005381526,0.00001185149,0.9910637,0.00006934669,0.0000406276,0.0005523177],"study_design_scores_gemma":[0.0005394577,0.0003804098,0.03869399,0.000008379989,0.000003547247,0.00003261894,0.0002040828,0.0000942851,0.9594914,0.00007981158,0.0003770119,0.00009495369],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989454,0.0002796148,0.0000380128,0.000117357,0.0000752222,0.0002717606,0.000003005959,0.000003683484,0.0002659322],"genre_scores_gemma":[0.9993958,0.00001088295,0.000112231,0.00003430839,0.00008330662,0.00001856245,0.000004521199,0.000004790541,0.0003355362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03157222,"threshold_uncertainty_score":0.2503338,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01845033286079431,"score_gpt":0.2737956395341677,"score_spread":0.2553453066733734,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}