{"id":"W3135055341","doi":"10.2139/ssrn.3659389","title":"Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories","year":2020,"lang":"en","type":"article","venue":"SSRN Electronic Journal","topic":"COVID-19 Clinical Research Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Immunophenotyping; Immune system; Context (archaeology); Transcriptome; Biology; Immunology; CD8; Cytotoxic T cell; Coronavirus disease 2019 (COVID-19); Computational biology; Virology; Disease; Medicine; Genetics; Gene; Flow cytometry; Infectious disease (medical specialty); Gene expression; Pathology; In vitro","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003577571,0.0003241156,0.000414095,0.0005105016,0.0003785202,0.001105266,0.0002431162,0.0004551582,0.003095034],"category_scores_gemma":[0.001274031,0.0001509964,0.000301359,0.0005425952,0.0001825247,0.0005392079,0.0004726345,0.0006196452,0.0009318481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002689766,"about_ca_system_score_gemma":0.0002693004,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006247816,"about_ca_topic_score_gemma":0.0008289113,"domain_scores_codex":[0.9996444,0.00006426041,0.00003424826,0.00009473715,0.00005915002,0.0001032537],"domain_scores_gemma":[0.999369,0.00013419,0.0002424196,0.00004249022,0.00007810254,0.0001338286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001554894,0.0001252681,0.9621932,0.00003831291,0.00007606102,0.0008854299,0.0001945935,0.0001310498,0.01396827,0.0002367434,0.0009294091,0.01966673],"study_design_scores_gemma":[0.00002078237,0.000450362,0.9916265,0.00003293987,0.00005363818,0.00276357,0.0004204171,0.0004024809,0.001628764,0.0003503124,0.002234916,0.00001535593],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959697,0.0006732855,0.0003427093,0.0001840112,0.00002424415,0.00001784864,0.0007633694,0.00001311088,0.002011898],"genre_scores_gemma":[0.9970582,0.0003733884,0.0003946958,0.0001419341,0.00003084132,0.00001696812,0.001193793,0.00001103305,0.0007791871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003095034,"threshold_uncertainty_score":0.01035392,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0347674634151365,"score_gpt":0.3728556640135253,"score_spread":0.3380882005983888,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}