{"id":"W3135466700","doi":"10.1038/s41416-020-01253-1","title":"Transitions in oral and gut microbiome of HPV+ oropharyngeal squamous cell carcinoma following definitive chemoradiotherapy (ROMA LA-OPSCC study)","year":2021,"lang":"en","type":"article","venue":"British Journal of Cancer","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto; Toronto General Hospital; University Health Network; Princess Margaret Cancer Centre","funders":"Princess Margaret Cancer Foundation; American Society of Clinical Oncology","keywords":"Microbiome; Fusobacterium nucleatum; Internal medicine; Metagenomics; Saliva; Head and neck squamous-cell carcinoma; Stage (stratigraphy); Medicine; Gut flora; Cohort; Chemoradiotherapy; Oncology; Gastroenterology; Biology; Cancer; Head and neck cancer; Immunology; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005430207,0.0002150003,0.0003929276,0.0002294877,0.00036669,0.0008113783,0.0003055388,0.0004305021,0.001521377],"category_scores_gemma":[0.0009630499,0.0002167812,0.0006641833,0.0002987768,0.0002266018,0.0002529385,0.0006932549,0.0004821697,0.0003995354],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004695278,"about_ca_system_score_gemma":0.0003918146,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005886201,"about_ca_topic_score_gemma":0.005351588,"domain_scores_codex":[0.9996471,0.00008836361,0.00002179401,0.0001115469,0.00004728478,0.00008384198],"domain_scores_gemma":[0.9996181,0.00004956931,0.0001263686,0.00005908245,0.00005191407,0.00009496378],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002955467,0.0002802663,0.9828006,0.00008559932,0.0002366705,0.0002328949,0.0004531068,0.0000690579,0.00345917,0.00002725195,0.0005729058,0.008827058],"study_design_scores_gemma":[0.000035041,0.0005547754,0.9980836,0.00001199483,0.00008769165,0.0002141743,0.0001827466,0.00005438199,0.0002072325,0.00001361869,0.0005505843,0.000004123277],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987906,0.000292066,0.00005323185,0.00004210721,0.000005240154,0.00001824427,0.0004820926,0.000003516624,0.0003130409],"genre_scores_gemma":[0.9985886,0.0001338243,0.00006550051,0.00004203442,0.00001102655,0.00002330869,0.0007419687,0.00000361775,0.0003901465],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005886201,"threshold_uncertainty_score":0.01170385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008450015526898672,"score_gpt":0.2717968957179888,"score_spread":0.2633468801910901,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}