{"id":"W3135774599","doi":"10.1128/mra.01489-20","title":"Draft Genome Sequences of Seven Vibrio cholerae Isolates from Adult Patients in Qatar","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Qatar National Research Fund; Qatar Foundation","keywords":"Vibrio cholerae; Biology; Genome; Virulence; Whole genome sequencing; Pandemic; Multilocus sequence typing; Microbiology; Pathogenicity island; Cholera; Pathogenicity; Gene; Genetics; Coronavirus disease 2019 (COVID-19); Genotype; Bacteria; Medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001265031,0.0002214626,0.0003360418,0.00006605803,0.00007571867,0.00001932729,0.0003387569,0.0002039115,0.00008721273],"category_scores_gemma":[0.0001345375,0.0002140847,0.00008709158,0.0001506786,0.0002359304,0.00000809186,0.0005528858,0.0001410007,0.0000318227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004561687,"about_ca_system_score_gemma":0.0001078894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002148158,"about_ca_topic_score_gemma":0.0003592267,"domain_scores_codex":[0.9982545,0.0002111019,0.0004113268,0.0005882497,0.00008183061,0.0004530321],"domain_scores_gemma":[0.9990804,0.00002168115,0.0001444439,0.0004069552,0.0002900697,0.00005643403],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001308335,0.0001654645,0.1170701,0.00001795154,0.0001487075,0.000007799021,0.0003381722,0.0000183565,0.8811984,7.264283e-7,0.0007697117,0.0001338347],"study_design_scores_gemma":[0.003821159,0.000739889,0.06816271,0.0001301317,0.00003343223,0.000010834,0.000947542,0.000006330785,0.5671704,0.00002766839,0.3583721,0.0005777933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946312,0.001675052,0.00001470473,0.0001791297,0.00007751456,0.0001887475,0.002960364,0.000007098801,0.0002662417],"genre_scores_gemma":[0.9787042,0.0006142497,0.0004068593,0.0006088295,0.0001048556,0.00002983274,0.01894666,0.00002426085,0.0005603055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3576024,"threshold_uncertainty_score":0.8730119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007117216539770329,"score_gpt":0.2322094229285962,"score_spread":0.2250922063888259,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}