{"id":"W3135882892","doi":"10.1101/2021.02.28.433253","title":"Supergene origin and maintenance in Atlantic cod","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"Universitetet i Oslo; National Science Council; Norwegian Sequencing Centre","keywords":"Supergene (geology); Biology; Introgression; Evolutionary biology; Gene; Haplotype; Genome; Genetics; Allele; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001579683,0.0001268933,0.0002145105,0.0008565411,0.0003535776,0.0004468573,0.0002389751,0.0003505622,0.0007885645],"category_scores_gemma":[0.0003594444,0.0001845011,0.0002499302,0.000671665,0.0003285066,0.000231593,0.0004908871,0.0004473333,0.0002434554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004361254,"about_ca_system_score_gemma":0.0002573895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003144287,"about_ca_topic_score_gemma":0.005027092,"domain_scores_codex":[0.9998719,0.000007154424,0.000008198887,0.00005755765,0.00002950985,0.00002560095],"domain_scores_gemma":[0.9996816,0.00007857686,0.0000978223,0.00003994405,0.00005007661,0.00005204244],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004613588,0.00003109577,0.1349932,0.00007646227,0.00005218478,0.0003509764,0.0005870581,0.0005623766,0.8522708,0.0005714305,0.0000854926,0.009957571],"study_design_scores_gemma":[0.00001240114,0.00009325405,0.9489051,0.00002183316,0.00004811348,0.0005933275,0.0003977286,0.001630959,0.04450039,0.000521434,0.003242509,0.00003303561],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985588,0.0001176622,0.0006043156,0.00001368749,0.000003016853,0.000002053265,0.0003390993,0.00001203825,0.0003493178],"genre_scores_gemma":[0.9966729,0.0001092224,0.001216056,0.0000273504,0.000004356547,0.000007875037,0.001189222,0.00002178772,0.0007512068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003144287,"threshold_uncertainty_score":0.006251991,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01080079258158833,"score_gpt":0.2101898535469848,"score_spread":0.1993890609653965,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}