{"id":"W3136143873","doi":"10.1186/s13100-021-00231-5","title":"Association analysis of repetitive elements and R-loop formation across species","year":2021,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Retrotransposon; Transposable element; Genome; Developmental biology; Repeated sequence; Genetics; Long terminal repeat; Evolutionary biology; Arabidopsis thaliana; Arabidopsis; Computational biology; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004530239,0.000107602,0.0002073642,0.001617452,0.0002527011,0.0002706979,0.0002225935,0.0002904786,0.002340883],"category_scores_gemma":[0.00094347,0.0000846438,0.0002910913,0.001092521,0.0002310837,0.000188443,0.0003246212,0.0002472482,0.0002150009],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001179192,"about_ca_system_score_gemma":0.0001044773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007196966,"about_ca_topic_score_gemma":0.001294072,"domain_scores_codex":[0.9995919,0.00006896896,0.00003106422,0.0002205176,0.00004156349,0.00004589664],"domain_scores_gemma":[0.9983799,0.0005754859,0.0006377524,0.0001047335,0.0001270968,0.0001748652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004221179,0.00006706729,0.8724315,0.0001400874,0.0005288297,0.0003139531,0.0003902876,0.0001990269,0.112741,0.0002369326,0.0001111182,0.01241814],"study_design_scores_gemma":[0.000004489121,0.000114345,0.9955901,0.000007440325,0.0001045441,0.0005104875,0.0001461471,0.0003848511,0.00253054,0.0001182508,0.0004832945,0.000005662223],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985008,0.0003561386,0.0005534666,0.000008920901,0.00000208322,0.00000448426,0.0002162054,0.000008598403,0.0003492219],"genre_scores_gemma":[0.9989848,0.00006884305,0.0004427852,0.000007432051,0.000003055613,0.000004242646,0.0003529935,0.000004272441,0.000131592],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002340883,"threshold_uncertainty_score":0.007831037,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01276825744028804,"score_gpt":0.2361931819003125,"score_spread":0.2234249244600245,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}