{"id":"W3136154333","doi":"10.1101/2021.03.15.435198","title":"<i>Borrelia</i> infection in rodent host has dramatic effects on the microbiome of ticks","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Borrelia afzelii; Microbiome; Ixodes ricinus; Biology; Ricinus; Tick; Borrelia; Host (biology); Lyme disease; Microbiology; Zoology; Borrelia burgdorferi; Virology; Immunology; Ecology; Antibody; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002055399,0.000340789,0.0002340675,0.0002028972,0.0001734318,0.0003904216,0.0001746264,0.0002366301,0.001805628],"category_scores_gemma":[0.0001293445,0.0001274433,0.0002278579,0.00009116202,0.0002893376,0.0001807161,0.0002951054,0.0005781929,0.0003800158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002001367,"about_ca_system_score_gemma":0.0001769215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005915138,"about_ca_topic_score_gemma":0.0008994216,"domain_scores_codex":[0.9997589,0.00004283267,0.00001886683,0.00007327565,0.00003837366,0.00006782463],"domain_scores_gemma":[0.9997649,0.00001873068,0.0001020363,0.00002605506,0.00001986816,0.00006838731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003587011,0.0000513097,0.001907716,0.00004007204,0.000009100076,0.00002884313,0.00001614661,0.00002139312,0.9963213,0.00003026481,0.0001153496,0.001099851],"study_design_scores_gemma":[0.00006330642,0.003110708,0.2103679,0.00003823052,0.00007436171,0.0007097353,0.0002813754,0.0007619752,0.7795182,0.0001033764,0.004947753,0.00002312083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958883,0.0007962467,0.000821305,0.0001730243,0.00004280484,0.00002396774,0.0009710818,0.0001039537,0.001179278],"genre_scores_gemma":[0.9951288,0.0004554964,0.001586694,0.0002686189,0.00002068707,0.00006788932,0.0009142836,0.00003293716,0.001524767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001805628,"threshold_uncertainty_score":0.006040454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01460910345803464,"score_gpt":0.1934162865470226,"score_spread":0.1788071830889879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}