{"id":"W3136235558","doi":"10.3390/microorganisms9030616","title":"Fecal Microbiome and Resistome Profiling of Healthy and Diseased Pakistani Individuals Using Next-Generation Sequencing","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Magna International (Canada)","funders":"","keywords":"Resistome; Microbiome; Biology; Dysbiosis; Feces; Antibiotics; Proteobacteria; Bacteroidetes; Antibiotic resistance; Metagenomics; Microbiology; Firmicutes; Genetics; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001987989,0.0001484669,0.0002039134,0.00005048046,0.0001735842,0.00005571943,0.00005746076,0.0001516718,0.00001063966],"category_scores_gemma":[0.00003066809,0.0001594733,0.0000348434,0.000115104,0.00009751525,0.000008229453,0.0001206725,0.00007797754,8.890598e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004873857,"about_ca_system_score_gemma":0.0004296216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006062625,"about_ca_topic_score_gemma":0.00005220378,"domain_scores_codex":[0.9989011,0.00009700001,0.0002935845,0.0003999392,0.00006262666,0.0002457342],"domain_scores_gemma":[0.9994549,0.00000835141,0.0001171921,0.0001997948,0.0001031829,0.0001165834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002157086,0.00002746096,0.004743632,0.0001771621,0.00002311234,0.000005012715,0.0001866093,0.000002084262,0.9945884,0.00004392163,0.00006592782,0.0001151119],"study_design_scores_gemma":[0.0005502451,0.0001032655,0.003886213,0.00003237755,0.00003276843,0.0001128628,0.0003752046,0.00002657918,0.9942743,0.00001958354,0.000420471,0.0001661962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935993,0.005147354,0.0007262572,0.0001568372,0.00007825108,0.0001668138,0.0001079663,0.00000817614,0.000009073625],"genre_scores_gemma":[0.9829381,0.0002647788,0.01576213,0.000524558,0.0001171134,0.000001912223,0.0003216148,0.00002726937,0.0000425595],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01503587,"threshold_uncertainty_score":0.6503134,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05384626383187512,"score_gpt":0.2894815539133472,"score_spread":0.2356352900814721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}