{"id":"W3136235558","doi":"10.3390/microorganisms9030616","title":"Fecal Microbiome and Resistome Profiling of Healthy and Diseased Pakistani Individuals Using Next-Generation Sequencing","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Magna International (Canada)","funders":"","keywords":"Resistome; Microbiome; Biology; Dysbiosis; Feces; Antibiotics; Proteobacteria; Bacteroidetes; Antibiotic resistance; Metagenomics; Microbiology; Firmicutes; Genetics; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002005893,0.0002535131,0.0002317768,0.000674525,0.0003232075,0.0003749861,0.00009235392,0.0003199619,0.001088698],"category_scores_gemma":[0.0003938203,0.0001132625,0.0001689441,0.000457559,0.0001731805,0.0001758698,0.0002508529,0.0002189954,0.000177044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001002082,"about_ca_system_score_gemma":0.0001400452,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001537516,"about_ca_topic_score_gemma":0.002313434,"domain_scores_codex":[0.9998552,0.00002354379,0.00001241552,0.00004603973,0.00003608376,0.00002669668],"domain_scores_gemma":[0.999876,0.00003021635,0.00004182509,0.000008137019,0.00002689028,0.00001688968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008853879,0.0001523948,0.6150989,0.0003581821,0.000139938,0.001305175,0.001167487,0.0003078284,0.3385976,0.0001473294,0.0005105672,0.04132927],"study_design_scores_gemma":[0.00001539992,0.0005700341,0.9659768,0.00006677891,0.0001037657,0.002809606,0.001645183,0.001313756,0.02316723,0.0002566105,0.004050115,0.00002478879],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961307,0.0007545555,0.001227357,0.00009649332,0.00001293769,0.00002238439,0.001012656,0.00001212414,0.0007307438],"genre_scores_gemma":[0.9937515,0.0006785541,0.003367596,0.0002087619,0.00001495731,0.00002570602,0.001056778,0.000004822055,0.0008913487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001537516,"threshold_uncertainty_score":0.003642082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05384626383187512,"score_gpt":0.2894815539133472,"score_spread":0.2356352900814721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}