{"id":"W3136573485","doi":"10.1186/s40168-021-01009-w","title":"Age and sex-associated variation in the multi-site microbiome of an entire social group of free-ranging rhesus macaques","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"National Institute of Mental Health; Natural Environment Research Council; National Institutes of Health; Sight Research UK; Alberta Children's Hospital Research Institute; Western Canada Research Grid; Canadian Institute for Advanced Research; Natural Sciences and Engineering Research Council of Canada; Leakey Foundation; Ford Foundation; Compute Canada; Office of Research Infrastructure Programs, National Institutes of Health; American Association of Physical Anthropologists","keywords":"Biology; Microbiome; Beta diversity; Metagenomics; Zoology; Microbial ecology; Feces; Physiology; Ecology; Biodiversity; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003806833,0.000143014,0.0002431286,0.00009500801,0.00008731268,0.00002491887,0.000193971,0.000218974,0.000009790409],"category_scores_gemma":[0.00002586116,0.0001326566,0.00008104828,0.0002586627,0.0001059652,0.000007899377,0.0001279681,0.00009942758,7.98321e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002498781,"about_ca_system_score_gemma":0.00005751087,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000329205,"about_ca_topic_score_gemma":0.001073609,"domain_scores_codex":[0.9988281,0.000231446,0.0003341227,0.0003010541,0.00005729419,0.0002480221],"domain_scores_gemma":[0.9994551,0.00001357619,0.000174523,0.0002621769,0.00006723061,0.00002741033],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002071372,0.0002932426,0.001415618,0.00009898637,0.00004158792,0.00001459002,0.002703405,5.695044e-7,0.9947925,0.00002818532,0.0001885105,0.0004020737],"study_design_scores_gemma":[0.003074056,0.0002182242,0.2108884,0.00007696531,0.0000575934,0.00005830289,0.0007782027,0.00002322856,0.7816288,0.00004182102,0.002850532,0.0003038831],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984524,0.0006216851,0.0001258086,0.0001388256,0.00006453252,0.0001649994,0.000393302,0.000006600124,0.00003182429],"genre_scores_gemma":[0.9970627,0.00007814831,0.001410656,0.0002066892,0.00004617159,0.000003979799,0.001040499,0.00001758205,0.0001335539],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2131637,"threshold_uncertainty_score":0.5409578,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01073519097203309,"score_gpt":0.2564895483374121,"score_spread":0.245754357365379,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}