{"id":"W3136573485","doi":"10.1186/s40168-021-01009-w","title":"Age and sex-associated variation in the multi-site microbiome of an entire social group of free-ranging rhesus macaques","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"National Institute of Mental Health; Natural Environment Research Council; National Institutes of Health; Sight Research UK; Alberta Children's Hospital Research Institute; Western Canada Research Grid; Canadian Institute for Advanced Research; Natural Sciences and Engineering Research Council of Canada; Leakey Foundation; Ford Foundation; Compute Canada; Office of Research Infrastructure Programs, National Institutes of Health; American Association of Physical Anthropologists","keywords":"Biology; Microbiome; Beta diversity; Metagenomics; Zoology; Microbial ecology; Feces; Physiology; Ecology; Biodiversity; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003135297,0.0002207137,0.0002543532,0.0007015429,0.000440638,0.0003950542,0.0001786293,0.0002362268,0.0007823704],"category_scores_gemma":[0.0007713359,0.0001029151,0.0001843732,0.0003030904,0.0003554115,0.0001905897,0.000574532,0.0001545211,0.0001619556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001691414,"about_ca_system_score_gemma":0.0001270129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004682378,"about_ca_topic_score_gemma":0.008831508,"domain_scores_codex":[0.9997638,0.00005129619,0.00001358778,0.00008714273,0.00003501056,0.00004911142],"domain_scores_gemma":[0.9995652,0.00005167019,0.0001926466,0.0000516267,0.00007210728,0.00006677717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002128718,0.00003812795,0.9323848,0.00004797299,0.0001512123,0.0002230701,0.001918092,0.00005753142,0.05756629,0.00003938909,0.0002235655,0.007137145],"study_design_scores_gemma":[7.788836e-7,0.00004231939,0.9989122,0.000004610635,0.00001346828,0.0001581751,0.0003297021,0.00005523528,0.0002550845,0.00001316233,0.0002128122,0.000002445782],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995728,0.0001196616,0.00005236879,0.000008655824,0.00000117848,0.000002321464,0.0001342163,0.000002223754,0.000106539],"genre_scores_gemma":[0.9992155,0.00008895074,0.000205954,0.00002421489,0.000003840922,0.00001514894,0.000317745,0.000003864282,0.0001246693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004682378,"threshold_uncertainty_score":0.009310246,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01073519097203309,"score_gpt":0.2564895483374121,"score_spread":0.245754357365379,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}