{"id":"W3136708589","doi":"10.1128/aem.02704-20","title":"Role of Phylogenetic Structure in the Dynamics of Coastal Viral Assemblages","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Ministry of Technology, Innovation and Citizens' Services; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Phylogenetic tree; Biology; Phylogenetics; Ecology; Evolutionary biology; Geography; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006177035,0.0002140275,0.0003316398,0.0010761,0.0006252314,0.0008267168,0.0002900806,0.0004534318,0.0004987573],"category_scores_gemma":[0.002199421,0.0003012407,0.0001976486,0.0006401309,0.00051869,0.0006761093,0.0007482505,0.0003725869,0.0001938574],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003694397,"about_ca_system_score_gemma":0.0003075809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001931354,"about_ca_topic_score_gemma":0.004128473,"domain_scores_codex":[0.9995624,0.0001024145,0.00003416234,0.0001590853,0.00006496439,0.00007693832],"domain_scores_gemma":[0.9987809,0.0002753394,0.0004995923,0.00009939764,0.0001797171,0.000165135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003533779,0.00005506047,0.7175832,0.0001063856,0.00009757769,0.0001177067,0.001097252,0.001222501,0.2646646,0.0004109068,0.00007979973,0.01421164],"study_design_scores_gemma":[0.000002926997,0.00009006645,0.9920114,0.0000128712,0.00001710915,0.00009674255,0.0005069653,0.002659691,0.003905993,0.0002437195,0.0004396617,0.00001283033],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988869,0.0002650117,0.0004129883,0.00002333599,0.000002474452,0.000002873466,0.00007291887,0.000005308041,0.0003281526],"genre_scores_gemma":[0.9991935,0.0001207921,0.0004266371,0.00001425901,0.00000367195,0.000004294292,0.0001157869,0.000003433749,0.0001175063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001931354,"threshold_uncertainty_score":0.003840268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002067070383583068,"score_gpt":0.1727447848883098,"score_spread":0.1706777145047267,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}