{"id":"W3136786679","doi":"10.1186/s13040-021-00251-0","title":"Indels in SARS-CoV-2 occur at template-switching hotspots","year":2021,"lang":"en","type":"article","venue":"BioData Mining","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"National Science Foundation of Sri Lanka; Stanford Bio-X; National Science Foundation","keywords":"Indel; Genetics; Biology; RNA; Computational biology; Homologous recombination; RNA polymerase; Recombination; Evolutionary biology; Gene; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003819455,0.000339669,0.0005482038,0.001775617,0.0004666371,0.0005669673,0.0003044794,0.0006284916,0.002246626],"category_scores_gemma":[0.001362268,0.0002859429,0.0007087725,0.001963735,0.0003038757,0.0003504082,0.0003740852,0.0005563497,0.0009365473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002076537,"about_ca_system_score_gemma":0.0001899399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007382452,"about_ca_topic_score_gemma":0.002096076,"domain_scores_codex":[0.9993487,0.00005563496,0.00006551887,0.0002735752,0.0001881523,0.00006845828],"domain_scores_gemma":[0.9984784,0.0004571083,0.0006120832,0.0001578052,0.0001692818,0.0001254189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001716378,0.0001504228,0.1955535,0.00101585,0.0004817949,0.004501267,0.001043019,0.002514959,0.7582355,0.000883136,0.001156093,0.03274821],"study_design_scores_gemma":[0.0000518729,0.0002742167,0.9092354,0.0001036284,0.0002816729,0.006073048,0.000417916,0.003317778,0.06901236,0.00108401,0.01005808,0.00009008853],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894856,0.001848691,0.00308277,0.00005148704,0.0000333798,0.00003359114,0.003511937,0.0002355248,0.001716939],"genre_scores_gemma":[0.9845282,0.0004100147,0.006682403,0.0001417954,0.00003928744,0.00003387974,0.007322639,0.00009614565,0.0007455442],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002246626,"threshold_uncertainty_score":0.007515669,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.121934235703093,"score_gpt":0.3875826429091648,"score_spread":0.2656484072060718,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}