{"id":"W3137363010","doi":"10.1128/msystems.01079-20","title":"Breast Milk Virome and Bacterial Microbiome Resilience in Kenyan Women Living with HIV","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","keywords":"Human virome; Breast milk; Microbiome; Breastfeeding; Breast feeding; Biology; Immunology; Population; Medicine; Metagenomics; Environmental health; Genetics; Pediatrics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002082912,0.0002058523,0.0001798247,0.0003108754,0.0007203299,0.000503545,0.0001950337,0.0003504581,0.001532598],"category_scores_gemma":[0.001366632,0.0001732413,0.0001083299,0.0003504648,0.00032223,0.0004469636,0.0007331221,0.000391364,0.0001176205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004091745,"about_ca_system_score_gemma":0.0003830971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01223354,"about_ca_topic_score_gemma":0.02111065,"domain_scores_codex":[0.9998723,0.00003271142,0.000006335322,0.00002792616,0.00001436139,0.00004642495],"domain_scores_gemma":[0.9998282,0.00003522025,0.00007967433,0.000008226482,0.0000157941,0.00003278802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005629616,0.00009022081,0.973091,0.00009856933,0.00005989244,0.0006741969,0.003428497,0.0000684711,0.004344821,0.0001892433,0.0004409809,0.01695103],"study_design_scores_gemma":[0.000005666669,0.0001725552,0.9933814,0.00008658032,0.00003043527,0.0004650228,0.004289981,0.0001594094,0.0002581965,0.0001388855,0.00100222,0.0000096515],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998487,0.0008114119,0.00002639598,0.0001462797,0.000005185244,0.000006135032,0.0001058706,9.321176e-7,0.0004107534],"genre_scores_gemma":[0.9991021,0.000477995,0.00006745141,0.00007040764,0.000005961698,0.000009417878,0.00005817315,0.000001071728,0.0002073204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01223354,"threshold_uncertainty_score":0.02432472,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006283282455989117,"score_gpt":0.223455576000924,"score_spread":0.2171722935449349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}