{"id":"W3137363010","doi":"10.1128/msystems.01079-20","title":"Breast Milk Virome and Bacterial Microbiome Resilience in Kenyan Women Living with HIV","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","keywords":"Human virome; Breast milk; Microbiome; Breastfeeding; Breast feeding; Biology; Immunology; Population; Medicine; Metagenomics; Environmental health; Genetics; Pediatrics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002972163,0.0001157464,0.0002471059,0.0001131508,0.0001090547,0.0001019734,0.0000691174,0.00007381492,0.0001175595],"category_scores_gemma":[0.00001283102,0.0001080924,0.00001551844,0.0002579524,0.000048732,0.0001145567,0.00003192396,0.0001215275,0.00003149465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001846172,"about_ca_system_score_gemma":0.00004786329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001814084,"about_ca_topic_score_gemma":0.0003154494,"domain_scores_codex":[0.9987975,0.0001683033,0.0002577454,0.0002893948,0.0001184463,0.0003686206],"domain_scores_gemma":[0.9995251,0.00006024589,0.00006954318,0.0001910037,0.00004069641,0.0001133678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008825986,0.0003745673,0.1210609,0.001933175,0.00002344897,0.0002222045,0.01991098,0.00000525397,0.8512912,0.0001989144,0.00261701,0.001479632],"study_design_scores_gemma":[0.007509151,0.0006712796,0.8848397,0.007733522,0.00002425143,0.008245879,0.01749439,0.000440383,0.01144292,0.00004451458,0.06026048,0.001293592],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975435,0.0001757703,0.000008080096,0.0007921362,0.0004754853,0.0001684828,0.00004916544,0.000043537,0.0007438048],"genre_scores_gemma":[0.9989296,0.00001176507,0.0001291819,0.0001805684,0.0002266221,0.00002012294,0.00001300524,0.00001833138,0.0004708332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8398483,"threshold_uncertainty_score":0.440788,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006283282455989117,"score_gpt":0.223455576000924,"score_spread":0.2171722935449349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}