{"id":"W3137633265","doi":"10.3390/v13030511","title":"Comparative Analysis of Within-Host Mutation Patterns and Diversity of Hepatitis C Virus Subtypes 1a, 1b, and 3a","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"Hepatitis C virus research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; AIDS Vancouver","funders":"National Institute of Allergy and Infectious Diseases; National Science Foundation","keywords":"Biology; Mutation rate; Genetics; Mutation; Host (biology); Evolutionary dynamics; Viral quasispecies; Viral evolution; Virus; Genetic diversity; Natural selection; Virology; Genetic variation; Hepatitis C virus; Negative selection; Evolutionary biology; Selection (genetic algorithm); Population; RNA; Gene; Genome; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003702339,0.000112816,0.0002233231,0.0007313744,0.0002561495,0.000303756,0.000105219,0.0002417654,0.0008188468],"category_scores_gemma":[0.0008145626,0.0001025833,0.0002375401,0.0004057917,0.0001559547,0.0001635478,0.0001394542,0.0001891495,0.0001830881],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001421109,"about_ca_system_score_gemma":0.0001016439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001358451,"about_ca_topic_score_gemma":0.002368273,"domain_scores_codex":[0.9997452,0.00006725644,0.0000212293,0.00007429459,0.0000527688,0.00003928511],"domain_scores_gemma":[0.9995822,0.0001303059,0.0001393363,0.00004845159,0.00005576622,0.0000439118],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001017864,0.00007626269,0.7557079,0.000060932,0.0002274637,0.000168555,0.000502275,0.000457976,0.2192347,0.0002500014,0.0001614286,0.02213481],"study_design_scores_gemma":[0.000005922009,0.0001264256,0.990966,0.000006693712,0.00003385846,0.0005444872,0.0001871777,0.00139561,0.006156706,0.00009221564,0.0004771868,0.000007821989],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992855,0.0001734029,0.0002085239,0.000006352774,8.929448e-7,0.000002782957,0.000135351,0.000002543343,0.0001846118],"genre_scores_gemma":[0.9992131,0.0000570052,0.0002961872,0.00001027509,0.000001640502,0.000005259351,0.0002883523,0.000004425799,0.000123729],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001358451,"threshold_uncertainty_score":0.00273931,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06141458205964859,"score_gpt":0.3456206525862539,"score_spread":0.2842060705266053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}