{"id":"W3137656879","doi":"10.3390/jof7030240","title":"Genomic Epidemiology of Candida auris in Qatar Reveals Hospital Transmission Dynamics and a South Asian Origin","year":2021,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Candida auris; Outbreak; Transmission (telecommunications); Molecular epidemiology; Biology; Multiple drug resistance; Epidemiology; Drug resistance; Genotype; Genetics; Microbiology; Virology; Medicine; Gene; Antifungal","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003227084,0.0001828439,0.0001329842,0.000770353,0.000384738,0.0003899414,0.0001321734,0.00021845,0.001511196],"category_scores_gemma":[0.000555161,0.0001275173,0.0002121645,0.0008612358,0.0003069048,0.0001475727,0.0002870026,0.0002073146,0.0001631242],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004163811,"about_ca_system_score_gemma":0.0004181718,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01616474,"about_ca_topic_score_gemma":0.01657071,"domain_scores_codex":[0.9997922,0.00005308062,0.00001532903,0.0000572918,0.00002971134,0.00005246702],"domain_scores_gemma":[0.9997321,0.0000458875,0.0001142791,0.00001713216,0.00005760528,0.00003305385],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002071785,0.00003631242,0.967187,0.00004184488,0.00005636382,0.0006340761,0.001912154,0.0003895953,0.01766541,0.0002044832,0.0004319908,0.01123365],"study_design_scores_gemma":[0.000005558708,0.00009091302,0.9965885,0.0000162434,0.00002773635,0.0005984459,0.001089807,0.0005881245,0.0004153786,0.0000622736,0.0005118349,0.000005204065],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992824,0.0001262189,0.0001389433,0.0000847496,0.000001642865,0.000005346566,0.0001487854,0.000003085491,0.0002088762],"genre_scores_gemma":[0.9992386,0.00009687887,0.0002241874,0.000057593,0.000003110738,0.000003938328,0.0002536174,0.000001154751,0.0001209325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01616474,"threshold_uncertainty_score":0.03214133,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01811482584289761,"score_gpt":0.2964682015089391,"score_spread":0.2783533756660415,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}