{"id":"W3137944384","doi":"10.1038/s41588-021-00807-0","title":"Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential","year":2021,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":272,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"Leibniz-Gemeinschaft; Agriculture and Agri-Food Canada; Directorate for Biological Sciences; European Regional Development Fund; German Network for Bioinformatics Infrastructure; Grantová Agentura České Republiky; Bundesministerium für Ernährung und Landwirtschaft; Deutsche Forschungsgemeinschaft; Universitätsmedizin Göttingen; Biotechnology and Biological Sciences Research Council; Noble Research Institute; Bundesministerium für Bildung und Forschung; Montana Wheat and Barley Committee","keywords":"Biology; Secale; Domestication; Genome; Germplasm; Introgression; Gene pool; Plant disease resistance; Genetics; Chromosome; Biotechnology; Gene; Agronomy; Genetic diversity","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003532506,0.0006114586,0.000467726,0.001192569,0.0004174473,0.001026001,0.0003303914,0.0004446401,0.002273069],"category_scores_gemma":[0.0007894554,0.0003417991,0.0007184257,0.001074515,0.0002139131,0.0006448172,0.0006655789,0.0009965426,0.001950079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003312145,"about_ca_system_score_gemma":0.000529266,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002632762,"about_ca_topic_score_gemma":0.007089678,"domain_scores_codex":[0.9998446,0.00001770177,0.00001242021,0.00007753649,0.00002940698,0.00001832408],"domain_scores_gemma":[0.999569,0.0001076788,0.00005832368,0.0001155652,0.00009476244,0.00005476527],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002315719,0.00004517404,0.007926609,0.0003018712,0.0001360841,0.0003715549,0.0003054133,0.002062178,0.9651626,0.001510423,0.001228005,0.02071847],"study_design_scores_gemma":[0.0001369045,0.0005931432,0.3994562,0.0003573952,0.0009114629,0.002297632,0.0009053044,0.0311434,0.340791,0.009083464,0.2141041,0.0002200998],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7058138,0.004203978,0.1968071,0.0007936278,0.0001996626,0.0001748157,0.07871531,0.003662768,0.009628895],"genre_scores_gemma":[0.6195577,0.003840399,0.1824421,0.0002171253,0.00005939381,0.0001387866,0.1875889,0.001582775,0.004572997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002632762,"threshold_uncertainty_score":0.007604241,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006950676464215408,"score_gpt":0.214072860239076,"score_spread":0.2071221837748606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}