{"id":"W3137952195","doi":"10.3201/eid2704.191716","title":"Genomic Surveillance of a Globally Circulating Distinct Group W Clonal Complex 11 Meningococcal Variant, New Zealand, 2013–2018","year":2021,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Environmental Science and Research","keywords":"Meningococcal Infections; Genetics; Neisseria meningitidis; Biology; Multilocus sequence typing; Group (periodic table); Meningococcal disease; Virology; Computational biology; Genotype; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005653789,0.0002779271,0.0001760095,0.0008926968,0.0003393535,0.0006756831,0.0002802954,0.0002044418,0.0005658115],"category_scores_gemma":[0.00164588,0.0001513597,0.0002014704,0.001049513,0.0003585458,0.000263868,0.0003905454,0.0003063304,0.0001437245],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001701336,"about_ca_system_score_gemma":0.002257527,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.3908977,"about_ca_topic_score_gemma":0.4207244,"domain_scores_codex":[0.999652,0.00001842221,0.00002714961,0.0000919413,0.000149181,0.0000612193],"domain_scores_gemma":[0.9992175,0.00003161674,0.0002954034,0.00003810017,0.0003006024,0.000116733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000488546,0.0000441486,0.8869231,0.0001914108,0.00009732891,0.001728773,0.003435316,0.0003701093,0.0675409,0.0001775405,0.002023624,0.03697914],"study_design_scores_gemma":[0.000006149638,0.00007275547,0.9937688,0.00002427914,0.00002218231,0.0006404206,0.0008522069,0.0001476357,0.001512618,0.00001961757,0.002926351,0.000006952495],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996108,0.0002806878,0.0002779415,0.0001071499,0.000007494257,0.00004525045,0.001857015,0.00001125556,0.001305235],"genre_scores_gemma":[0.9944978,0.0005480885,0.001028715,0.00008306573,0.000007970915,0.00002454634,0.002954001,0.00000970404,0.0008461477],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3908977,"threshold_uncertainty_score":0.7772448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01387444899403855,"score_gpt":0.2477846296006491,"score_spread":0.2339101806066105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}