{"id":"W3138444583","doi":"10.1101/2021.03.19.436162","title":"Cellar: Interactive single cell data annotation tool","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Christie (Canada)","funders":"National Institutes of Health","keywords":"Annotation; Computer science; Profiling (computer programming); Software; Key (lock); Information retrieval; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00441121,0.002779673,0.001997582,0.005301915,0.001449528,0.003905684,0.004587675,0.001617076,0.0728505],"category_scores_gemma":[0.008701105,0.0019307,0.002056187,0.004032311,0.0006230162,0.002971942,0.004442332,0.002836869,0.04687106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009767305,"about_ca_system_score_gemma":0.002043724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00296493,"about_ca_topic_score_gemma":0.00414401,"domain_scores_codex":[0.9980908,0.0002351548,0.0002101363,0.0005567959,0.0007437399,0.0001634051],"domain_scores_gemma":[0.9954985,0.001866095,0.0002497082,0.001221368,0.0008567512,0.0003076107],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007940103,0.0001347047,0.002618671,0.001613477,0.0003012893,0.0006732168,0.0004620808,0.005651908,0.02655995,0.008240279,0.8770403,0.07591003],"study_design_scores_gemma":[0.0005427984,0.0001192322,0.00537463,0.0004058596,0.0001407438,0.0009392156,0.0003251977,0.07569317,0.08251518,0.036339,0.7972088,0.0003961711],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002503932,0.00023647,0.2375723,0.0002702033,0.000265034,0.0002239274,0.1808125,0.5749232,0.003192511],"genre_scores_gemma":[0.02575272,0.0004718869,0.2443643,0.0007509307,0.0001116785,0.002713373,0.5995793,0.1189878,0.007268129],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.0728505,"threshold_uncertainty_score":0.2437092,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02146370403990095,"score_gpt":0.2252182333072175,"score_spread":0.2037545292673165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}