{"id":"W3138524708","doi":"10.3390/genes12030419","title":"Set-Based Rare Variant Expression Quantitative Trait Loci in Blood and Brain from Alzheimer Disease Study Participants","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute on Aging; Canadian Institutes of Health Research","keywords":"Expression quantitative trait loci; Biology; Quantitative trait locus; TREM2; Single-nucleotide polymorphism; Gene; Genome-wide association study; Genetics; Inflammation; Immunology; Microglia; Genotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002061321,0.0004063189,0.0005293127,0.000943903,0.0005442019,0.0007469114,0.0007009933,0.0004769423,0.002300541],"category_scores_gemma":[0.005815547,0.0002116911,0.0005634857,0.001043061,0.0003035777,0.0001728393,0.0006059452,0.0005195643,0.0002409089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002924466,"about_ca_system_score_gemma":0.0002750952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004811688,"about_ca_topic_score_gemma":0.004839121,"domain_scores_codex":[0.9984805,0.0005932554,0.0001026453,0.0004867822,0.0002268147,0.000109972],"domain_scores_gemma":[0.9980721,0.0008964642,0.0003805873,0.00029061,0.0002146304,0.0001454995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00324155,0.0002330115,0.9494638,0.0001449102,0.00124985,0.001418241,0.001774278,0.001069013,0.02471443,0.0006869734,0.001146951,0.01485708],"study_design_scores_gemma":[0.000239192,0.0006011672,0.9886273,0.0000292071,0.0004182772,0.001577173,0.0003806025,0.002430339,0.002814218,0.0009474483,0.001891326,0.00004385174],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934592,0.000153058,0.002628081,0.00004231072,0.000007701858,0.00006982248,0.003156407,0.00001951805,0.0004640615],"genre_scores_gemma":[0.9921371,0.00008317822,0.003180466,0.0001029544,0.000008490338,0.0002800668,0.003728598,0.0000234536,0.0004556254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004811688,"threshold_uncertainty_score":0.01090145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05154887072899671,"score_gpt":0.3251288993269068,"score_spread":0.2735800285979101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}