{"id":"W3139316222","doi":"10.1186/s12866-021-02158-6","title":"Human cell-dependent, directional, time-dependent changes in the mono- and oligonucleotide compositions of SARS-CoV-2 genomes","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Research Organization of Information and Systems; Core Research for Evolutional Science and Technology; Institute of Genetics; Japan Agency for Medical Research and Development","keywords":"Biology; Genome; Clade; Population; Coronavirus; Host adaptation; Adaptation (eye); Virus; Oligonucleotide; Host (biology); Coronaviridae; Virology; Gene; Genetics; Evolutionary biology; Coronavirus disease 2019 (COVID-19); Phylogenetics; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014786,0.0001369136,0.0001596637,0.0002485368,0.0001127514,0.0002559408,0.00008266324,0.0001992416,0.001267778],"category_scores_gemma":[0.0003386345,0.0001173787,0.0001566522,0.000280543,0.0001323493,0.0001323719,0.0001077357,0.000185964,0.000330007],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00015494,"about_ca_system_score_gemma":0.0001599235,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008101283,"about_ca_topic_score_gemma":0.001049416,"domain_scores_codex":[0.9998209,0.00003063406,0.00001057871,0.00006126774,0.0000531476,0.00002346672],"domain_scores_gemma":[0.9998122,0.00004635694,0.00005127201,0.00001903228,0.00005085817,0.00002027324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002792325,0.00002467088,0.008346934,0.00004965172,0.00001597547,0.00004906436,0.00007847772,0.0002608525,0.9860178,0.00005980841,0.00007984634,0.004737572],"study_design_scores_gemma":[0.00001685225,0.0009276826,0.2236029,0.00001672073,0.00007189557,0.0007107948,0.0003478301,0.004601543,0.7630318,0.0001851025,0.006457052,0.00002989058],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994414,0.001301706,0.002001397,0.00003518367,0.00001861091,0.00002692565,0.0008484162,0.00002727681,0.001326556],"genre_scores_gemma":[0.9931918,0.0008833271,0.00278289,0.00006558519,0.00001053908,0.00005071565,0.001772461,0.00001086927,0.001231751],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001267778,"threshold_uncertainty_score":0.004241168,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04896130018538487,"score_gpt":0.3334713145669643,"score_spread":0.2845100143815795,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}