{"id":"W3139351361","doi":"10.1128/jcm.02470-20","title":"Phenotypic and Genomic Profiling of Staphylococcus argenteus in Canada and the United States and Recommendations for Clinical Result Reporting","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Biology; Multilocus sequence typing; Staphylococcus aureus; Genetics; Bacterial taxonomy; Microbiology; Virulence; Genotype; 16S ribosomal RNA; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.004779425,0.0001238289,0.001171242,0.00008897416,0.00005603561,0.00001031292,0.0000768687,0.0001438194,0.000007480575],"category_scores_gemma":[0.01316932,0.00008325259,0.0001503261,0.0001472008,0.0005569621,0.00002813129,0.00009357923,0.0006317854,7.10718e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005354705,"about_ca_system_score_gemma":0.00145761,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01104786,"about_ca_topic_score_gemma":0.07124659,"domain_scores_codex":[0.9945662,0.0005351033,0.004383423,0.0002536847,0.00004484854,0.0002167648],"domain_scores_gemma":[0.9901782,0.005727372,0.003205725,0.000173995,0.0005837291,0.0001310363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005568792,0.0001660943,0.9526786,0.000193907,0.0003875868,0.00009865866,0.0001600639,0.00001497349,0.0301786,0.0002025798,0.00276698,0.00758317],"study_design_scores_gemma":[0.04529191,0.001909183,0.8681794,0.001454083,0.0009514329,0.00179752,0.005607914,0.0007635798,0.008160491,0.002721538,0.06266142,0.0005015426],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896721,0.002395124,0.0002015389,0.006936864,0.0003675116,0.0003333413,0.00008154217,0.000001880582,0.00001015333],"genre_scores_gemma":[0.9763673,0.0111116,0.01045825,0.001787809,0.0001752845,0.000003226176,0.00005108905,0.00001497532,0.0000304899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08449921,"threshold_uncertainty_score":0.9955376,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0843073657788697,"score_gpt":0.4032378659747257,"score_spread":0.318930500195856,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}