{"id":"W3139351361","doi":"10.1128/jcm.02470-20","title":"Phenotypic and Genomic Profiling of Staphylococcus argenteus in Canada and the United States and Recommendations for Clinical Result Reporting","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Biology; Multilocus sequence typing; Staphylococcus aureus; Genetics; Bacterial taxonomy; Microbiology; Virulence; Genotype; 16S ribosomal RNA; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002586061,0.0003953665,0.0003268365,0.00425263,0.002106041,0.001715035,0.001306701,0.0008932984,0.001442696],"category_scores_gemma":[0.008965719,0.0002249865,0.0003712481,0.003436869,0.0009423488,0.0003907927,0.000596861,0.000772023,0.0003156857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01562539,"about_ca_system_score_gemma":0.03376832,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9514139,"about_ca_topic_score_gemma":0.9655979,"domain_scores_codex":[0.9961854,0.0003889462,0.0003871,0.0001773996,0.002419125,0.0004419527],"domain_scores_gemma":[0.9903735,0.0006204484,0.0007255597,0.0001484206,0.00721065,0.000921417],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005785706,0.0002599204,0.7574743,0.0005866756,0.00007050558,0.006284181,0.003160246,0.001151846,0.0142914,0.002159672,0.06698475,0.1469979],"study_design_scores_gemma":[0.00002145987,0.0001634813,0.9131863,0.000943509,0.0001311902,0.004029399,0.01183287,0.001642457,0.006764638,0.0004496343,0.06075843,0.00007656853],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7547996,0.02916095,0.008918296,0.09144089,0.001163612,0.000986508,0.01534329,0.0007159747,0.0974709],"genre_scores_gemma":[0.9382887,0.01892266,0.0187886,0.00957819,0.0002222627,0.0001194232,0.004984143,0.0001239507,0.008972055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04858607,"threshold_uncertainty_score":0.1133707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0843073657788697,"score_gpt":0.4032378659747257,"score_spread":0.318930500195856,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}