{"id":"W3142899449","doi":"10.1093/nar/gkab204","title":"Crucial role of <i>Salmonella</i> genomic island 1 master activator in the parasitism of IncC plasmids","year":2021,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Compute Canada; Fondation pour la Recherche Médicale; Public Health Agency; Public Health Agency of Canada; Natural Sciences and Engineering Research Council of Canada; Université de Sherbrooke","keywords":"Plasmid; Biology; Genomic island; Promoter; Genetics; Gene; Activator (genetics); Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001374256,0.0003147025,0.0003408036,0.0002442282,0.0001866757,0.0005841547,0.0002294691,0.0003550358,0.001854526],"category_scores_gemma":[0.0002444697,0.0002026995,0.0003279502,0.0001086701,0.0002748928,0.0002598959,0.0006491148,0.0006830713,0.001116192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004645313,"about_ca_system_score_gemma":0.0003803943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007780162,"about_ca_topic_score_gemma":0.001047856,"domain_scores_codex":[0.9997937,0.00001700562,0.0000101067,0.00006618891,0.00005897263,0.00005399544],"domain_scores_gemma":[0.9997668,0.00004628235,0.00005525776,0.00002762781,0.00003053868,0.00007350475],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007189104,0.00001128622,0.0009763311,0.00005767717,0.000002786304,0.00005216173,0.00002805581,0.00005424489,0.9967635,0.0001643009,0.0001278211,0.001690075],"study_design_scores_gemma":[0.0000113849,0.0001393581,0.04142552,0.00003211512,0.00001373336,0.0004221523,0.0001018164,0.002729457,0.9473031,0.0001668293,0.007634257,0.00002026507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896047,0.002368141,0.003836431,0.0002392666,0.00004640369,0.00003087575,0.0009460738,0.000371951,0.002556179],"genre_scores_gemma":[0.9935008,0.0003959154,0.002254857,0.0001125239,0.00001062002,0.00002234084,0.001549784,0.00007119281,0.002081936],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001854526,"threshold_uncertainty_score":0.006204069,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06010327887594314,"score_gpt":0.3047747038828951,"score_spread":0.2446714250069519,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}