{"id":"W3145763192","doi":"10.3390/ijms22073617","title":"Construction of Whole Genomes from Scaffolds Using Single Cell Strand-Seq Data","year":2021,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; AbCellera (Canada); Stemcell Technologies; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Terry Fox Research Institute","keywords":"Biology; Genome; Genetics; Sequence assembly; Computational biology; Contig; Chromosome; Chromosome conformation capture; Reference genome; Genomics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001105152,0.000907579,0.000786557,0.001880452,0.000718714,0.001345824,0.0007401987,0.0006884391,0.003053139],"category_scores_gemma":[0.002525568,0.0007344136,0.001179686,0.001466926,0.000432668,0.0008341999,0.001003887,0.001296159,0.003080224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005201455,"about_ca_system_score_gemma":0.0008184462,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001351934,"about_ca_topic_score_gemma":0.005239503,"domain_scores_codex":[0.9995845,0.00005589712,0.00004870061,0.0001559906,0.0001196824,0.0000352969],"domain_scores_gemma":[0.9985846,0.000460907,0.0002409157,0.0003626817,0.0002681919,0.00008269356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002750313,0.00003859281,0.001768408,0.0006029559,0.0001048512,0.0002628133,0.0003653968,0.004004615,0.9622344,0.002596534,0.001006072,0.02674038],"study_design_scores_gemma":[0.0000640293,0.0002885158,0.01256545,0.000141627,0.0001906675,0.0004797998,0.0002999337,0.03468883,0.8825493,0.007216116,0.06140679,0.0001089391],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1132544,0.0009169283,0.8463616,0.0001998935,0.00028045,0.0004613801,0.02777737,0.006977354,0.003770726],"genre_scores_gemma":[0.109533,0.001250789,0.8292169,0.0001562751,0.00004338969,0.000505372,0.05394112,0.002216431,0.003136713],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003053139,"threshold_uncertainty_score":0.01021373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03683228135698552,"score_gpt":0.2856664988375304,"score_spread":0.2488342174805449,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}