{"id":"W3147713100","doi":"10.1080/19490976.2021.1902705","title":"The Impact of Migration on the Gut Metagenome of South Asian Canadians","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital; University of Ottawa; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Metagenomics; Prevotella; Biology; Dominance (genetics); Gut flora; Relative species abundance; Immigration; Microbiome; Abundance (ecology); Ecology; Immunology; Bioinformatics; Geography; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002324948,0.0003424922,0.0003085889,0.0007952921,0.001995907,0.001005496,0.0002673643,0.0002517269,0.001332018],"category_scores_gemma":[0.0005080759,0.0001410994,0.0003855461,0.001829164,0.000431048,0.0001718492,0.0006318276,0.0003567332,0.0001423269],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004529277,"about_ca_system_score_gemma":0.007151864,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9211289,"about_ca_topic_score_gemma":0.9621505,"domain_scores_codex":[0.9996958,0.00001967628,0.000009888024,0.00007393118,0.00006636888,0.000134359],"domain_scores_gemma":[0.9997358,0.00001581893,0.00003805052,0.00001128915,0.0001304782,0.00006864421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000917976,0.00003844963,0.8856901,0.0002238022,0.0003419691,0.0002896788,0.004679615,0.0004397416,0.0838881,0.0003051032,0.001331444,0.02185411],"study_design_scores_gemma":[0.000003452367,0.00002050326,0.9954479,0.0000162168,0.00004802107,0.00006875827,0.002056392,0.0001704342,0.0006351558,0.00002834208,0.001494606,0.00001016266],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964366,0.0004810852,0.000128168,0.00009772512,0.000007870754,0.00000796967,0.002028934,0.000006189974,0.0008054476],"genre_scores_gemma":[0.9958949,0.0004396938,0.0004059038,0.0001180464,0.000003972266,0.000009107343,0.001944261,0.000009528717,0.00117456],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07887107,"threshold_uncertainty_score":0.1586711,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009855088686643263,"score_gpt":0.2544211197881802,"score_spread":0.244566031101537,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}