{"id":"W3149308363","doi":"10.1007/s00248-021-01838-0","title":"Dynamic Subspecies Population Structure of Vibrio cholerae in Dhaka, Bangladesh","year":2021,"lang":"en","type":"article","venue":"Microbial Ecology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Alberta Innovates - Technology Futures","keywords":"Vibrio cholerae; Biology; Cholera; Population; Dominance (genetics); Brackish water; Euryhaline; Ecology; Abundance (ecology); El Tor; Veterinary medicine; Salinity; Microbiology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005901051,0.0001175378,0.0002336074,0.00006876293,0.00004126141,0.0000118628,0.0001218631,0.0001951481,0.0002502666],"category_scores_gemma":[0.0001369242,0.0001251198,0.00006263847,0.000134421,0.00009845898,0.000004137506,0.0002235976,0.0001094059,0.000004565364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004660953,"about_ca_system_score_gemma":0.00009794761,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000648718,"about_ca_topic_score_gemma":0.01575106,"domain_scores_codex":[0.9990237,0.0001122122,0.0002376679,0.0002998896,0.00005600643,0.0002705223],"domain_scores_gemma":[0.9995623,0.00001359504,0.00006950667,0.0002211222,0.0001040543,0.00002940614],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005604246,0.00004187196,0.04267714,0.00002688416,0.00003578407,0.00001194798,0.00005576833,0.00006711009,0.9562811,0.00002436487,0.000473248,0.0002487275],"study_design_scores_gemma":[0.0006406297,0.00009337067,0.6083124,0.00000776901,0.000005646126,0.00002738959,0.00005546746,0.00001180628,0.3885165,0.00006506611,0.002156223,0.000107703],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988213,0.0002998178,0.00001512276,0.0002987818,0.0002274581,0.0001203441,0.00009944067,0.000004913091,0.0001128722],"genre_scores_gemma":[0.9980434,0.0001306103,0.0005147703,0.0001217004,0.00006936706,0.000003898033,0.0006580667,0.0000142528,0.0004439701],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5677646,"threshold_uncertainty_score":0.878946,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004656857131695201,"score_gpt":0.2431550838690588,"score_spread":0.2384982267373636,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}