{"id":"W3150400184","doi":"10.3390/v13040601","title":"Phylogenetic Clustering among Asylum Seekers with New HIV-1 Diagnoses in Montreal, QC, Canada","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Intégré de Santé et de Services Sociaux des Laurentides; Centre intégré de santé et de services sociaux de Chaudière-Appalaches; Centre Hospitalier de l’Université de Montréal; McGill University; Jewish General Hospital; Santé Montérégie; Université de Montréal; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé","keywords":"Genotyping; Phylogenetic tree; Population; Demography; Transmission (telecommunications); Cluster analysis; Cohort; Cluster (spacecraft); Medicine; Biology; Genotype; Genetics; Sociology; Computer science; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007158298,0.0003104936,0.0003742272,0.002100382,0.003083714,0.001033206,0.001093107,0.0004059829,0.002565603],"category_scores_gemma":[0.001980032,0.0002072081,0.0002679732,0.002877627,0.0008085226,0.0002791226,0.0006874727,0.0003963808,0.0001476991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01745251,"about_ca_system_score_gemma":0.01301053,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9882596,"about_ca_topic_score_gemma":0.9928121,"domain_scores_codex":[0.9992231,0.0001026478,0.00003038363,0.0001732926,0.000156963,0.000313553],"domain_scores_gemma":[0.9986577,0.000102801,0.0003212746,0.00004776136,0.0005798029,0.0002906756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007748599,0.00001700434,0.9890085,0.00003168292,0.00003526626,0.0001771976,0.001991369,0.0002083089,0.001070684,0.000141745,0.001017801,0.006222916],"study_design_scores_gemma":[0.000005510964,0.00002910413,0.995624,0.00003008762,0.00001406654,0.0001206769,0.002296851,0.0006766091,0.0001482149,0.00002633924,0.001015935,0.00001253629],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960924,0.0006201009,0.0003289828,0.0002599983,0.000006905966,0.00006076245,0.001460384,0.00001583329,0.001154603],"genre_scores_gemma":[0.9981697,0.0002132796,0.0003405045,0.00006395562,0.000003277825,0.0000120716,0.0005796321,0.000005836311,0.0006117379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01745251,"threshold_uncertainty_score":0.1266274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0133540584269711,"score_gpt":0.2317200403625859,"score_spread":0.2183659819356148,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}