{"id":"W3150871800","doi":"10.1101/2021.03.30.436303","title":"Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus <i>Rhizophagus irregularis</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Royal Society; Gatsby Charitable Foundation; University of Cambridge; Cancer Research UK; Wellcome Trust; Natural Sciences and Engineering Research Council of Canada; Bill and Melinda Gates Foundation","keywords":"Biology; Rhizophagus irregularis; Transposable element; Epigenetics; DNA methylation; Genome; Genetics; Gene; Adaptation (eye); Epigenomics; Lineage (genetic); Gene silencing; Gene expression; Symbiosis; Arbuscular mycorrhizal","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008168686,0.0001148363,0.00008882485,0.0001357401,0.00007871686,0.0001989762,0.00007713721,0.0001237947,0.0005234617],"category_scores_gemma":[0.0001311519,0.00006790209,0.00009308582,0.00009075245,0.0001351089,0.00006492803,0.0001289442,0.0001623054,0.0002055608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001179601,"about_ca_system_score_gemma":0.00005037147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005790085,"about_ca_topic_score_gemma":0.0007167913,"domain_scores_codex":[0.9999263,0.000009323532,0.000003563645,0.00003396274,0.00001427799,0.00001253831],"domain_scores_gemma":[0.9999098,0.00001967797,0.0000345576,0.00001058393,0.00001006466,0.00001543561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004971759,0.000005119221,0.001692484,0.000007218997,0.000002025505,0.00002233096,0.00001873437,0.00003236552,0.997385,0.00003677756,0.00001284329,0.0007354476],"study_design_scores_gemma":[0.00001748551,0.0002052966,0.3324907,0.0000115683,0.0000207969,0.0004126495,0.0001582731,0.002303983,0.6622984,0.0001967489,0.001873231,0.00001088165],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983445,0.0002185081,0.0005866544,0.00002388999,0.00000297065,0.000002559679,0.0002132533,0.00001787533,0.0005898321],"genre_scores_gemma":[0.9986255,0.00005842466,0.0003226188,0.00001202066,0.000002481203,0.000003023509,0.0002663847,0.00000698674,0.0007025072],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005790085,"threshold_uncertainty_score":0.001751125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01149812274352824,"score_gpt":0.1913756203846089,"score_spread":0.1798774976410807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}