{"id":"W3151285088","doi":"10.1097/olq.0000000000001419","title":"Utility of Whole Genome Sequencing in Assessing and Enhancing Partner Notification of Neisseria gonorrhoeae Infection","year":2021,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Jewish General Hospital","funders":"National Institute for Health and Care Research","keywords":"Gonorrhea; Concordance; Neisseria gonorrhoeae; Medicine; Whole genome sequencing; Single-nucleotide polymorphism; Transmission (telecommunications); Neisseria; Genome; Genetics; Family medicine; Biology; Internal medicine; Gene; Genotype; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003016636,0.0001247382,0.0002860309,0.0001943231,0.000085338,0.00001866338,0.00005987702,0.0001170312,0.0002670273],"category_scores_gemma":[0.0003190763,0.0001298638,0.00005630494,0.0004610307,0.0002299344,0.0002549963,0.00002467441,0.0002070833,0.000009290563],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005274057,"about_ca_system_score_gemma":0.0004117426,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004835863,"about_ca_topic_score_gemma":0.0002558506,"domain_scores_codex":[0.9984995,0.0004197732,0.0004424116,0.0003901037,0.00003239635,0.0002158685],"domain_scores_gemma":[0.9990289,0.0002261966,0.000119347,0.0003149855,0.0002832292,0.00002739832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005767674,0.000269742,0.157216,0.000221696,0.00006810947,0.000001154184,0.000446647,0.000103537,0.8350572,0.00007174769,0.000002748914,0.006483784],"study_design_scores_gemma":[0.0004267395,0.00004620125,0.7602453,0.00005157471,0.00004488166,0.00001213504,0.0005310425,0.00002682973,0.238082,0.0001384299,0.0003044414,0.0000904183],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942953,0.002963975,0.001965293,0.00007034094,0.0001168556,0.0002054329,0.00005905042,0.00003164467,0.0002921059],"genre_scores_gemma":[0.999428,0.0000940073,0.00008486593,0.00000879934,0.00001299384,0.00001799918,0.0002172375,0.00001242425,0.0001236803],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6030293,"threshold_uncertainty_score":0.5295692,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02832230437568852,"score_gpt":0.3097660915802534,"score_spread":0.2814437872045649,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}