{"id":"W3151285088","doi":"10.1097/olq.0000000000001419","title":"Utility of Whole Genome Sequencing in Assessing and Enhancing Partner Notification of Neisseria gonorrhoeae Infection","year":2021,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Jewish General Hospital","funders":"National Institute for Health and Care Research","keywords":"Gonorrhea; Concordance; Neisseria gonorrhoeae; Medicine; Whole genome sequencing; Single-nucleotide polymorphism; Transmission (telecommunications); Neisseria; Genome; Genetics; Family medicine; Biology; Internal medicine; Gene; Genotype; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003164993,0.0002897498,0.0001963625,0.0009312348,0.000169922,0.0007732176,0.0003563234,0.0004045973,0.0005521457],"category_scores_gemma":[0.005985542,0.0001708392,0.00017807,0.000604302,0.0001926128,0.0003713212,0.0005077968,0.000265635,0.0001180262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003036067,"about_ca_system_score_gemma":0.0004754272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00238897,"about_ca_topic_score_gemma":0.005678075,"domain_scores_codex":[0.9990932,0.0005051656,0.00005284135,0.0001136042,0.0001532466,0.00008184814],"domain_scores_gemma":[0.9971443,0.001472161,0.0005392099,0.0001982426,0.0004279832,0.0002182273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003840041,0.0001495619,0.9169731,0.0002029442,0.0000918261,0.0003334701,0.0006051449,0.002537693,0.01354749,0.0001239285,0.0006243748,0.06442649],"study_design_scores_gemma":[0.00004402,0.001071253,0.9627406,0.0001855826,0.0001894076,0.001928592,0.0009782242,0.01594648,0.01197717,0.0004784961,0.004429897,0.00003022691],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916875,0.0007417566,0.004611209,0.0002496951,0.00001445976,0.0001222066,0.000646979,0.00008521293,0.001841016],"genre_scores_gemma":[0.9855447,0.0003450096,0.01343092,0.0001177031,0.000008817618,0.00002924449,0.0003797644,0.000008981717,0.0001347295],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003164993,"threshold_uncertainty_score":0.0167383,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02832230437568852,"score_gpt":0.3097660915802534,"score_spread":0.2814437872045649,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}