{"id":"W3152515821","doi":"10.1364/oe.423740","title":"Virtual hematoxylin and eosin histopathology using simultaneous photoacoustic remote sensing and scattering microscopy","year":2021,"lang":"en","type":"article","venue":"Optics Express","topic":"Photoacoustic and Ultrasonic Imaging","field":"Engineering","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"H&E stain; Microscopy; Eosin; Optics; Confocal microscopy; Materials science; Staining; Confocal; Eosin Y; Fluorescence microscope; Fluorescence; Biomedical engineering; Pathology; Chemistry; Medicine; Physics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009970571,0.0002341988,0.0003005455,0.00006621665,0.0001418532,0.0001107143,0.00006238181,0.0001102587,0.000007967667],"category_scores_gemma":[0.0001296344,0.0002815707,0.00002797918,0.00008927703,0.0001400723,0.00008202517,0.0001022494,0.0002427801,0.000001922452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007852208,"about_ca_system_score_gemma":0.00003037839,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002754064,"about_ca_topic_score_gemma":0.000003875068,"domain_scores_codex":[0.9988928,0.00002987542,0.0002458565,0.0003301304,0.0001060714,0.0003952702],"domain_scores_gemma":[0.9992842,0.0002616565,0.00003653072,0.0002422549,0.00005532709,0.0001200383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00000586509,0.00000562913,0.0000118766,0.0001392117,0.00001262536,0.00061859,0.0006257342,0.04832159,0.9457111,0.000009943596,0.00001253826,0.004525278],"study_design_scores_gemma":[0.0002986565,0.000010332,0.000009003071,0.0002001257,0.00005779634,0.002266521,0.0003924474,0.8598291,0.1364639,0.00007253855,0.0001238341,0.0002757355],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6558527,0.001037201,0.3423863,0.0000121113,0.0003183546,0.00006462581,0.00001496178,0.0001072112,0.0002064851],"genre_scores_gemma":[0.8879598,0.0001963245,0.1115304,0.00008748863,0.00007272576,3.294783e-7,0.000005364732,0.00006155509,0.00008597285],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8115075,"threshold_uncertainty_score":0.9999636,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008954041891570078,"score_gpt":0.2292028815788288,"score_spread":0.2202488396872587,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}