{"id":"W3152986528","doi":"10.21769/bioprotoc.3993","title":"Single Cell Analysis and Sorting of Aspergillus fumigatus by Flow Cytometry","year":2021,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Flow cytometry; Cell sorting; Sorting; Throughput; Aspergillus fumigatus; Cytometry; Single-cell analysis; Cell; Cell biology; Biology; Biological system; Chemistry; Molecular biology; Computational biology; Computer science; Microbiology; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001143409,0.0001629504,0.0002508085,0.00007158518,0.0000663557,0.00003353244,0.0001141843,0.0001825863,0.0000758925],"category_scores_gemma":[0.0000481262,0.0001572819,0.0001727235,0.0004127119,0.0000792096,0.000003748414,0.00008218037,0.00007400678,0.000001978939],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001128514,"about_ca_system_score_gemma":0.00005657917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004001773,"about_ca_topic_score_gemma":0.00004544231,"domain_scores_codex":[0.9988695,0.00005667113,0.0003238562,0.000389333,0.0001385675,0.0002220996],"domain_scores_gemma":[0.9993287,0.00001199368,0.0001285407,0.0003190896,0.0001163261,0.00009533009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008680316,0.000227951,0.01684737,0.0001139585,0.0001369119,0.000004660239,0.00002269341,0.00001486227,0.9761917,0.000002391661,0.0003336153,0.00601707],"study_design_scores_gemma":[0.001053954,0.0002222149,0.001028327,0.00001043357,0.00009035227,0.000003079955,0.00004124834,0.0002212012,0.9632519,0.000008952071,0.03388121,0.0001871609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8335665,0.0002836484,0.01505413,0.00008668272,0.0001309479,0.1433711,0.00018473,0.00004635282,0.007275879],"genre_scores_gemma":[0.9049827,0.000008347687,0.006359906,0.0001820995,0.0001546042,0.08705813,0.0001913685,0.00003970281,0.001023097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07141621,"threshold_uncertainty_score":0.6413769,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01179237057996581,"score_gpt":0.2539206909722469,"score_spread":0.2421283203922811,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}