{"id":"W3153035715","doi":"10.1101/2021.04.20.440708","title":"Transcriptomic Changes During Stage Progression of Mycosis Fungoides","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cutaneous lymphoproliferative disorders research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; University of Alberta","funders":"Bispebjerg Hospital; Alberta Innovates; University of Alberta; Canadian Dermatology Foundation","keywords":"Transcriptome; Mycosis fungoides; Laser capture microdissection; Cancer research; Biology; CDKN2A; Tumor progression; Pathology; Medicine; Lymphoma; Cancer; Gene expression; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009684573,0.0001737992,0.0002957969,0.0004532,0.0002134436,0.0003542342,0.00007688825,0.0002370937,0.001213649],"category_scores_gemma":[0.0001886556,0.00009323826,0.0002600057,0.0005345657,0.0001026087,0.000166317,0.0002113392,0.0002367758,0.0002994818],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001527018,"about_ca_system_score_gemma":0.0001237805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006373552,"about_ca_topic_score_gemma":0.0008135712,"domain_scores_codex":[0.9998949,0.000008189699,0.000005349593,0.00004295763,0.00002054669,0.0000281291],"domain_scores_gemma":[0.9999087,0.00002115974,0.00002604552,0.000005974049,0.00002389782,0.00001425652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005882586,0.00002700421,0.03201895,0.0003014677,0.00007561068,0.0002809189,0.0001970286,0.0002935824,0.9568166,0.00009576736,0.000551621,0.008753291],"study_design_scores_gemma":[0.0000187474,0.0003168228,0.9419306,0.0000682581,0.0001218907,0.0009045973,0.0005218355,0.002025771,0.04733445,0.0003613761,0.006370248,0.00002543885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.986936,0.002133419,0.001253042,0.00005610385,0.00002382211,0.00001990951,0.008955115,0.0000486193,0.0005739226],"genre_scores_gemma":[0.9828143,0.001051147,0.00161209,0.00008927689,0.00001833469,0.00006947098,0.0129173,0.00002262618,0.001405433],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001213649,"threshold_uncertainty_score":0.00406003,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0217465674143844,"score_gpt":0.2785815279676113,"score_spread":0.2568349605532269,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}