{"id":"W3153064393","doi":"10.1038/s41467-021-22607-0","title":"Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil","year":2021,"lang":"en","type":"article","venue":"Nature Communications","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Inyuvesi Yakwazulu-Natali; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Ministerio de Economía y Competitividad; Ministério da Ciência, Tecnologia, Inovações e Comunicações; Ministério da Saúde; South African Medical Research Council; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Ministério da Ciência, Tecnologia e Inovação; Bundesamt für Gesundheit; European Commission; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; University of Oxford; National Institutes of Health; International Development Research Centre","keywords":"Dengue virus; Clade; Preparedness; Nanopore sequencing; Phylogenetic tree; Transmission (telecommunications); Lineage (genetic); Evolutionary biology; Biology; Public health; Dengue fever; Genome; Phylogenetics; Data science; Computational biology; Virology; Genetics; Computer science; Political science; Medicine; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003199604,0.0004303632,0.0002723431,0.0005443455,0.0005954269,0.0004929354,0.0009161932,0.0004283158,0.002891471],"category_scores_gemma":[0.005012208,0.0002119694,0.0003750667,0.000423851,0.0004395437,0.0006635313,0.00153377,0.0005483454,0.0005690354],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001447414,"about_ca_system_score_gemma":0.003901498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02353881,"about_ca_topic_score_gemma":0.05275933,"domain_scores_codex":[0.9987603,0.0005965482,0.00003381103,0.0002056222,0.000184364,0.0002193777],"domain_scores_gemma":[0.9975177,0.000732836,0.0002944397,0.0003122394,0.0005473663,0.0005954504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007989971,0.001898584,0.3619254,0.001126173,0.0001208026,0.001207489,0.011453,0.01218983,0.09127668,0.003227304,0.012382,0.5023938],"study_design_scores_gemma":[0.0006146866,0.007981916,0.6611814,0.001819182,0.0003017132,0.00159686,0.01942241,0.07571253,0.07098801,0.01078365,0.1492767,0.0003209681],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.915261,0.0009160424,0.05317983,0.00361367,0.0001697273,0.002101636,0.003409516,0.001628778,0.01971976],"genre_scores_gemma":[0.935359,0.0004191608,0.06011466,0.0004737549,0.00002999473,0.0007410724,0.001088314,0.00006575111,0.001708377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02353881,"threshold_uncertainty_score":0.04680359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03507598637123429,"score_gpt":0.3736302085033227,"score_spread":0.3385542221320885,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}