{"id":"W3153691888","doi":"10.3390/microorganisms9040841","title":"A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses","year":2021,"lang":"en","type":"review","venue":"Microorganisms","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Consortium of International Agricultural Research Centers; FOD Volksgezondheid, Veiligheid van de Voedselketen en Leefmilieu; Javna Agencija za Raziskovalno Dejavnost RS; Bill and Melinda Gates Foundation","keywords":"Human virome; Computer science; Throughput; Computational biology; Data science; Metagenomics; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00328023,0.001404703,0.00145742,0.004481555,0.0005429423,0.001631565,0.001363651,0.00272248,0.004034393],"category_scores_gemma":[0.004024431,0.0007604923,0.001618601,0.003630304,0.001730009,0.003399779,0.001497951,0.006209052,0.004223039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001153227,"about_ca_system_score_gemma":0.002703865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001595466,"about_ca_topic_score_gemma":0.002063254,"domain_scores_codex":[0.9985689,0.0004088435,0.0002309948,0.0002114282,0.0004793907,0.0001003994],"domain_scores_gemma":[0.995995,0.002603588,0.0003233412,0.0001832544,0.0007273132,0.0001674188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001360514,0.0001380648,0.0005012614,0.02891191,0.0002278314,0.0006951919,0.0003933834,0.0009075763,0.02259251,0.03226552,0.06875519,0.8444756],"study_design_scores_gemma":[0.00001034514,0.000126585,0.0007395332,0.004790777,0.00007291486,0.001248143,0.00006178475,0.0001521888,0.004569138,0.006805513,0.9813753,0.00004771979],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003428681,0.9613697,0.02452726,0.004574972,0.00320465,0.0001630455,0.000348252,0.0001640942,0.005305125],"genre_scores_gemma":[0.002149269,0.9613336,0.02452471,0.005594429,0.001167312,0.0002011184,0.0005646351,0.0000713328,0.004393607],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004481555,"threshold_uncertainty_score":0.01734775,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2446651050053913,"score_gpt":0.3518219374254218,"score_spread":0.1071568324200305,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}