{"id":"W3154135158","doi":"10.1128/aem.00385-21","title":"Transcriptomic and Metabolomic Responses to Carbon and Nitrogen Sources in Methylomicrobium album BG8","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canada First Research Excellence Fund; Alberta Innovates Bio Solutions; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Methanotroph; Biology; Biochemistry; Nitrogen assimilation; Chemistry; Anaerobic oxidation of methane; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001771524,0.0004307124,0.0003146305,0.0002850172,0.0001720053,0.0002913139,0.0001266993,0.0002507587,0.0003879588],"category_scores_gemma":[0.0002244879,0.000125423,0.0002881476,0.00035282,0.0001748418,0.0001943597,0.0002207682,0.0003170532,0.0002021113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00017147,"about_ca_system_score_gemma":0.0002238507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001560875,"about_ca_topic_score_gemma":0.002077856,"domain_scores_codex":[0.9998493,0.00001853419,0.00001257634,0.000046232,0.00004554068,0.00002768823],"domain_scores_gemma":[0.9999018,0.00002686132,0.00002114236,0.000009042335,0.00002653919,0.00001469262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001133988,0.00001397913,0.001023036,0.00002702625,0.000004051648,0.00002854936,0.00002632233,0.00007782214,0.9977127,0.00001314676,0.00001872159,0.0009413051],"study_design_scores_gemma":[0.0000197535,0.0006494022,0.189174,0.00003376286,0.00008008657,0.0003292712,0.000656361,0.004434005,0.8015061,0.000209492,0.002861192,0.00004660879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936073,0.0004820837,0.001169539,0.00008448958,0.00001563768,0.00002584022,0.004024356,0.00005445426,0.0005363164],"genre_scores_gemma":[0.9857459,0.0005710102,0.005011317,0.0001320768,0.00001212656,0.0001139262,0.006679275,0.00004549155,0.001688889],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001560875,"threshold_uncertainty_score":0.003103554,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003909663727257452,"score_gpt":0.1780709850908863,"score_spread":0.1741613213636289,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}