{"id":"W3154135158","doi":"10.1128/aem.00385-21","title":"Transcriptomic and Metabolomic Responses to Carbon and Nitrogen Sources in Methylomicrobium album BG8","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canada First Research Excellence Fund; Alberta Innovates Bio Solutions; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Methanotroph; Biology; Biochemistry; Nitrogen assimilation; Chemistry; Anaerobic oxidation of methane; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001352061,0.0002082662,0.0002690517,0.00006745373,0.00006171552,0.00001408987,0.00005704076,0.000197601,0.00001648774],"category_scores_gemma":[0.000007878338,0.0002093492,0.00002893227,0.00004582864,0.0001841153,0.00000344176,0.0001807302,0.00009887245,0.000004085408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001125698,"about_ca_system_score_gemma":0.00001508228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000479261,"about_ca_topic_score_gemma":0.00008043539,"domain_scores_codex":[0.9988512,0.0000916599,0.0001961048,0.0005695667,0.00001845372,0.0002729741],"domain_scores_gemma":[0.9996995,0.00001558852,0.00003409708,0.0001593427,0.000002693252,0.00008875525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002689743,0.00003516841,0.005442811,0.00001176682,0.00003810597,0.000003102836,0.0001826882,0.000002470972,0.9927717,0.00002795058,0.0001315974,0.001083697],"study_design_scores_gemma":[0.001027597,0.00008153119,0.01175317,0.000004554678,0.00004297818,0.0001946407,0.0004594098,0.000001316869,0.9430865,0.00006002207,0.04303594,0.0002523577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898915,0.009413711,0.00002709571,0.0001690726,0.00009499872,0.0001806015,0.0001569924,0.000006197557,0.0000598484],"genre_scores_gemma":[0.9957299,0.002324852,0.0004676929,0.0009551062,0.00006837858,0.00002176446,0.0002206236,0.00002212595,0.0001896101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04968518,"threshold_uncertainty_score":0.8537011,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003909663727257452,"score_gpt":0.1780709850908863,"score_spread":0.1741613213636289,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}