{"id":"W3154206657","doi":"10.1172/jci.insight.147363","title":"Penile bacteria associated with HIV seroconversion, inflammation, and immune cells","year":2021,"lang":"en","type":"article","venue":"JCI Insight","topic":"Genital Health and Disease","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network; Western University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; University of Toronto; National Institutes of Health; King's College London","keywords":"Foreskin; Prevotella; Immunology; Anaerobic bacteria; Peptostreptococcus; Medicine; Microbiology; Immune system; Bacterial vaginosis; Human immunodeficiency virus (HIV); Seroconversion; Biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005155012,0.00009820827,0.0001787361,0.0000403257,0.00008822538,0.00002209334,0.0000240671,0.00006843993,0.0007481888],"category_scores_gemma":[0.00008002845,0.00007847585,0.00002837397,0.0001679071,0.00003000378,0.0001017738,0.00002889611,0.00009208571,0.0001285232],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004057382,"about_ca_system_score_gemma":0.0002889147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001176418,"about_ca_topic_score_gemma":0.00001666336,"domain_scores_codex":[0.9992895,0.00003584942,0.0001799136,0.0001706015,0.000149877,0.0001742388],"domain_scores_gemma":[0.9992129,0.00003631252,0.00006274795,0.0001745138,0.0002334504,0.000280098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002934914,0.001756415,0.1727018,0.002942485,0.0002562931,0.003163696,0.007132065,0.00000991839,0.7590507,0.000729551,0.04588674,0.003435433],"study_design_scores_gemma":[0.00678813,0.0003846433,0.7111155,0.0001591327,0.0002513418,0.00007786301,0.0005170112,0.0001576823,0.2316104,0.0001110544,0.04852402,0.0003032186],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904156,0.0005212105,0.000006930029,0.001327045,0.00009658658,0.0001975206,0.00001421953,0.00004578087,0.007375123],"genre_scores_gemma":[0.9920297,0.0000141276,0.0001717468,0.000511896,0.0000746621,0.00000974253,0.0002708485,0.00001327823,0.006904018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5384136,"threshold_uncertainty_score":0.8192142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00879732692892285,"score_gpt":0.2233766885946285,"score_spread":0.2145793616657056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}