{"id":"W3154206657","doi":"10.1172/jci.insight.147363","title":"Penile bacteria associated with HIV seroconversion, inflammation, and immune cells","year":2021,"lang":"en","type":"article","venue":"JCI Insight","topic":"Genital Health and Disease","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network; Western University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; University of Toronto; National Institutes of Health; King's College London","keywords":"Foreskin; Prevotella; Immunology; Anaerobic bacteria; Peptostreptococcus; Medicine; Microbiology; Immune system; Bacterial vaginosis; Human immunodeficiency virus (HIV); Seroconversion; Biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002116721,0.0001875989,0.000183704,0.0005865683,0.0002077428,0.0004487613,0.00008601919,0.0001967216,0.001865354],"category_scores_gemma":[0.0004056308,0.00008612088,0.0001146563,0.0005429581,0.000186537,0.0001459221,0.000253351,0.0003745084,0.00008820084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000122971,"about_ca_system_score_gemma":0.0001632694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006122353,"about_ca_topic_score_gemma":0.0006855825,"domain_scores_codex":[0.9998179,0.00006266349,0.00001140006,0.00002517412,0.00003928834,0.00004352445],"domain_scores_gemma":[0.9996831,0.0000579312,0.0001429329,0.00001845264,0.00002948953,0.00006817199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001087483,0.0002085799,0.9058086,0.0001967455,0.00009199841,0.001078016,0.0002150299,0.0001226162,0.06511,0.0001341726,0.0003701317,0.02557666],"study_design_scores_gemma":[0.000007629989,0.0002835789,0.9920385,0.00004087013,0.00003573596,0.001700251,0.0003104263,0.0001554861,0.004251099,0.0001046992,0.001066832,0.000004852581],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935979,0.004163352,0.0002339949,0.0001001171,0.00002143488,0.00001827331,0.0002743539,0.000008759821,0.001581905],"genre_scores_gemma":[0.9978337,0.001082181,0.0003219458,0.00006536847,0.00003139702,0.000009234847,0.0001660948,0.000001263179,0.0004887338],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001865354,"threshold_uncertainty_score":0.006240249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00879732692892285,"score_gpt":0.2233766885946285,"score_spread":0.2145793616657056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}