{"id":"W3154321427","doi":"","title":"Classification of porcine reproductive and respiratory syndrome virus in Ontario using Bayesian phylogenetics and assessment of temporal trends.","year":2021,"lang":"en","type":"article","venue":"PubMed","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Clade; Porcine reproductive and respiratory syndrome virus; Biology; Population; Virus; Phylogenetic tree; Phylogenetics; Herd; Virology; Genotype; Zoology; Evolutionary biology; Demography; Veterinary medicine; Genetics; Ecology; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002107407,0.00005914917,0.0001562104,0.00002312032,0.0000450556,0.000006600287,0.00002600074,0.00003533686,0.00001230244],"category_scores_gemma":[0.00003628771,0.00002944239,0.00001785227,0.000241293,0.00009596392,0.00004110672,0.00005525937,0.00006404105,2.369077e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005548739,"about_ca_system_score_gemma":0.00001441299,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.00896724,"about_ca_topic_score_gemma":0.1341214,"domain_scores_codex":[0.9993702,0.00005405659,0.0001921237,0.0002108028,0.00007725822,0.00009557909],"domain_scores_gemma":[0.9997345,0.00003034536,0.0001095279,0.00004274215,0.00005760254,0.00002531997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000007616472,0.00006437042,0.8917893,0.000005111923,0.00001247862,0.000002659554,0.00004751163,0.000001659566,0.08156746,0.00007088543,0.000002921794,0.02642806],"study_design_scores_gemma":[0.00008132358,0.00007156767,0.996313,0.000005742942,0.00001289184,0.000008336881,0.0001676008,0.00001334756,0.002890326,0.00007606886,0.0003077265,0.00005202838],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987171,0.0003883608,0.000002084172,0.0001114337,0.00002511086,0.0001078127,0.000009629597,0.00000410144,0.0006343958],"genre_scores_gemma":[0.9995862,0.00002452716,0.0002674038,0.00001092745,0.00001448074,0.00003078626,0.000003737476,5.008216e-7,0.00006144204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1251541,"threshold_uncertainty_score":0.9976321,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0919131959850376,"score_gpt":0.2730781753396429,"score_spread":0.1811649793546053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}