{"id":"W3154321427","doi":"","title":"Classification of porcine reproductive and respiratory syndrome virus in Ontario using Bayesian phylogenetics and assessment of temporal trends.","year":2021,"lang":"en","type":"article","venue":"PubMed","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Clade; Porcine reproductive and respiratory syndrome virus; Biology; Population; Virus; Phylogenetic tree; Phylogenetics; Herd; Virology; Genotype; Zoology; Evolutionary biology; Demography; Veterinary medicine; Genetics; Ecology; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001722262,0.0002013045,0.0002264275,0.002835381,0.001265452,0.0009481311,0.000503043,0.0004693237,0.002412509],"category_scores_gemma":[0.005860653,0.0001836234,0.0003763113,0.002542781,0.0005275498,0.0004840197,0.0006757501,0.0004980476,0.0003614207],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004143103,"about_ca_system_score_gemma":0.00649638,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8230708,"about_ca_topic_score_gemma":0.9067092,"domain_scores_codex":[0.9991702,0.0001479288,0.00008622786,0.0001549193,0.0002628935,0.0001778484],"domain_scores_gemma":[0.9972807,0.0006362342,0.0006640049,0.0001339913,0.001030636,0.0002544853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001678346,0.0000168982,0.9708623,0.0001164666,0.0001128544,0.00007828612,0.0009657826,0.0009510326,0.002838644,0.0004446964,0.002022656,0.02142271],"study_design_scores_gemma":[0.00001035217,0.00003199485,0.9864249,0.00007616475,0.00008389965,0.0001339381,0.001808643,0.006060836,0.0002103522,0.0002930263,0.004853624,0.00001226645],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9653495,0.001820491,0.005940738,0.0006211923,0.00003976806,0.0001410306,0.01800835,0.00007797019,0.008000875],"genre_scores_gemma":[0.982333,0.0005378211,0.00726593,0.00006182298,0.00000796753,0.00003829067,0.008037871,0.00002250671,0.001694874],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1769292,"threshold_uncertainty_score":0.3559424,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0919131959850376,"score_gpt":0.2730781753396429,"score_spread":0.1811649793546053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}