{"id":"W3155253090","doi":"10.1002/mbo3.1196","title":"Differential protein expression during growth on model and commercial mixtures of naphthenic acids in <i>Pseudomonas fluorescens</i> Pf‐5","year":2021,"lang":"en","type":"article","venue":"MicrobiologyOpen","topic":"Petroleum Processing and Analysis","field":"Chemistry","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"MacEwan University; Canada’s Oil Sands Innovation Alliance; University of Calgary","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences","keywords":"Pseudomonas fluorescens; Biochemistry; Chemistry; Fatty acid; Metabolic pathway; Metabolism; Fatty acid metabolism; Carboxylic acid; Catabolism; Enzyme; Amino acid; Biodegradation; Biology; Bacteria; Organic chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006039914,0.0001900247,0.0003896205,0.00007607894,0.00009498663,0.00002615585,0.0002173972,0.0002125962,0.0001481607],"category_scores_gemma":[0.00004572079,0.0001623323,0.00009059905,0.0001023345,0.0001139822,0.0000491981,0.0002309121,0.0002869591,0.000002921903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002901979,"about_ca_system_score_gemma":0.00004914276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003706689,"about_ca_topic_score_gemma":0.00003174006,"domain_scores_codex":[0.9989248,0.00006293949,0.0002943795,0.0003956757,0.00006687022,0.0002553244],"domain_scores_gemma":[0.9995345,0.00002661481,0.0001112053,0.0002320744,0.00004984178,0.00004577707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002076511,0.0001578251,0.005441048,0.0001737729,0.00003184842,0.0000171739,0.0001618867,0.0000261589,0.9932278,0.00001345326,0.00005627112,0.0004851551],"study_design_scores_gemma":[0.001223748,0.00001301745,0.001034264,0.0003912756,0.00002379722,0.00001572191,0.00004388562,0.0001439956,0.9968176,0.00007971031,0.00003952923,0.0001734047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983888,0.0002498952,0.00002082412,0.0001464587,0.00001467562,0.00001890042,0.00005925747,0.00002143017,0.001079726],"genre_scores_gemma":[0.9978721,0.00003544292,0.0003658595,0.0000488128,0.00004327991,0.000011363,0.00009033538,0.00001750691,0.001515301],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004406784,"threshold_uncertainty_score":0.661972,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008218495630613097,"score_gpt":0.220179985801059,"score_spread":0.2119614901704459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}