{"id":"W3156517348","doi":"10.3390/microorganisms9040812","title":"A Novel Marine Pathogen Isolated from Wild Cunners (Tautogolabrus adspersus): Comparative Genomics and Transcriptome Profiling of Pseudomonas sp. Strain J380","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Genome Atlantic; Ocean Frontier Institute; Natural Sciences and Engineering Research Council of Canada; Atlantic Canada Opportunities Agency; Genome Canada","keywords":"Biology; Microbiology; Pseudomonas; Virulence; Transcriptome; Pathogen; Comparative genomics; Bacteria; Gene; Genetics; Genome; Genomics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004932438,0.0003547237,0.0003056699,0.0002877448,0.0002268177,0.0002771293,0.0001028318,0.0002511085,0.0005731327],"category_scores_gemma":[0.00009455174,0.0001118955,0.0002552988,0.0002973429,0.0001752489,0.0001997379,0.0002836896,0.0003431099,0.0001975107],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001224447,"about_ca_system_score_gemma":0.0001702983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001974903,"about_ca_topic_score_gemma":0.002996479,"domain_scores_codex":[0.9999026,0.000003842611,0.000005792366,0.00004060845,0.00002651773,0.00002066779],"domain_scores_gemma":[0.9999322,0.000009707079,0.00002181316,0.000004182024,0.00001372628,0.00001842484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004843691,0.00001107752,0.001765979,0.00003780716,0.000003322976,0.00008452068,0.00004368684,0.00001853073,0.9971621,0.000006828768,0.00002169017,0.000796083],"study_design_scores_gemma":[0.00001956719,0.001208221,0.566883,0.00003875403,0.0001227796,0.002225463,0.001721872,0.001736312,0.4211644,0.000116209,0.004711575,0.00005185723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997712,0.0002250287,0.0003862956,0.00003754831,0.000009081233,0.00001340367,0.001228159,0.00002094269,0.0003676544],"genre_scores_gemma":[0.9899347,0.0004235109,0.002120682,0.0001069607,0.00001299085,0.00004887192,0.004493134,0.00002710654,0.002831956],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001974903,"threshold_uncertainty_score":0.003926754,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01507345437354097,"score_gpt":0.2247214715691411,"score_spread":0.2096480171956002,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}