{"id":"W3156517348","doi":"10.3390/microorganisms9040812","title":"A Novel Marine Pathogen Isolated from Wild Cunners (Tautogolabrus adspersus): Comparative Genomics and Transcriptome Profiling of Pseudomonas sp. Strain J380","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Genome Atlantic; Ocean Frontier Institute; Natural Sciences and Engineering Research Council of Canada; Atlantic Canada Opportunities Agency; Genome Canada","keywords":"Biology; Microbiology; Pseudomonas; Virulence; Transcriptome; Pathogen; Comparative genomics; Bacteria; Gene; Genetics; Genome; Genomics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001164669,0.0003711778,0.0006025156,0.00008848808,0.0001591276,0.00004081718,0.0002524462,0.0002935738,0.001210724],"category_scores_gemma":[0.00001408482,0.0003628129,0.0001479474,0.0002411773,0.0002818197,0.00009793525,0.0002413988,0.000312255,0.0001052844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005457472,"about_ca_system_score_gemma":0.0001158078,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001834985,"about_ca_topic_score_gemma":0.0001030182,"domain_scores_codex":[0.9983261,0.0001113234,0.0004787729,0.0006172027,0.00004327781,0.0004233815],"domain_scores_gemma":[0.9992448,0.00004881369,0.0001849448,0.0003282693,0.0001382711,0.00005490533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002643921,0.0003657617,0.0005349392,0.00004363388,0.0008114301,0.00003180268,0.004178557,0.000002875479,0.992191,0.0004295778,0.000645866,0.0005001535],"study_design_scores_gemma":[0.003829477,0.0001382885,0.002858712,0.00004124483,0.0003838776,0.00007570039,0.006729507,0.00001385981,0.9778292,0.000122782,0.007526859,0.0004505329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895733,0.004254441,0.002217638,0.0002281482,0.0003412191,0.0004546365,0.002136945,0.00008492715,0.0007087706],"genre_scores_gemma":[0.9862118,0.0001687733,0.006988605,0.0003487706,0.00003882323,0.000009073496,0.004687983,0.00004795959,0.001498257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01436185,"threshold_uncertainty_score":0.9998824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01507345437354097,"score_gpt":0.2247214715691411,"score_spread":0.2096480171956002,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}