{"id":"W3156632136","doi":"10.1080/19490976.2021.1903825","title":"Association of Pre-diagnostic Antibody Responses to Escherichia coli and Bacteroides fragilis Toxin Proteins with Colorectal Cancer in a European Cohort","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Provincial Health Services Authority","funders":"Medical Research Council; Eusko Jaurlaritza; European Cooperation in Science and Technology; National Institute for Health and Care Research; Cancer Research UK; World Health Organization","keywords":"Bacteroides fragilis; Biology; Colorectal cancer; Escherichia coli; Microbiology; Toxin; Bacteroides; Antibody; Adenomatous polyposis coli; Cohort; Cancer; Immunology; Bacteria; Genetics; Internal medicine; Gene; Antibiotics; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002600285,0.0001261783,0.0001947743,0.00004529639,0.00004532412,0.00002584951,0.00007353739,0.00008551835,0.00002790717],"category_scores_gemma":[0.0003300528,0.0001199102,0.0000257989,0.0001515598,0.00003707235,0.000004856181,0.0000941336,0.00008772646,0.000002923221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004564294,"about_ca_system_score_gemma":0.0002292843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003860054,"about_ca_topic_score_gemma":0.004304583,"domain_scores_codex":[0.9989658,0.0002255215,0.0002077028,0.000312808,0.00006559421,0.0002225567],"domain_scores_gemma":[0.9995133,0.0000498029,0.00009845811,0.0001381623,0.0001370768,0.00006314832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001694512,0.00005773831,0.3742602,0.00004216778,0.00003719611,0.000007748611,0.0002063506,0.000005806591,0.6246983,0.000001162417,0.0004070614,0.0001067121],"study_design_scores_gemma":[0.000313313,0.000195893,0.5881885,0.00008623269,0.00001531544,0.000005859722,0.00004339131,8.644653e-7,0.4086447,8.220483e-7,0.002414149,0.00009096366],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978464,0.0009093824,0.0000447183,0.0004166976,0.00004023651,0.0004592483,0.0001461666,0.000006390797,0.0001307305],"genre_scores_gemma":[0.9969317,0.0006283274,0.001020416,0.0002736022,0.00004736004,0.00003226039,0.00008756972,0.00002139053,0.0009573395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2160537,"threshold_uncertainty_score":0.4889797,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004313909254965519,"score_gpt":0.2520475676751752,"score_spread":0.2477336584202097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}