{"id":"W3157232913","doi":"10.1080/2162402x.2021.1918373","title":"A bacterium-derived, cancer-associated immunopeptidome","year":2021,"lang":"en","type":"letter","venue":"OncoImmunology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"Context (archaeology); Immune system; Biology; Cancer; Bacteria; Medicine; Immunology; Microbiology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.00008456641,0.0004771781,0.0006986915,0.00007495845,0.0002337589,0.0001055744,0.0006561781,0.001368026,0.07215414],"category_scores_gemma":[0.00004471739,0.0004915947,0.0003095437,0.0002885437,0.0003935352,0.0002041174,0.0007443086,0.002516598,0.0038108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001167763,"about_ca_system_score_gemma":0.00009905107,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007654062,"about_ca_topic_score_gemma":0.001151375,"domain_scores_codex":[0.9975411,0.0002733104,0.0004691267,0.0007420174,0.0001719272,0.00080257],"domain_scores_gemma":[0.998714,0.00009501644,0.0003920719,0.0007215223,0.00003606603,0.00004135147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00000839421,0.00005594508,0.00004428071,0.000008143229,0.0001801874,0.0003197434,0.0001148611,0.000001557305,0.4436794,4.676781e-7,0.5529048,0.002682159],"study_design_scores_gemma":[0.0003586282,0.00009038282,0.01278077,0.0001068935,0.00009534357,0.0001595647,0.00003401891,0.000001703359,0.002501475,0.0000107757,0.9833591,0.0005013531],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.2649944,0.0021525,0.0000158938,0.6901022,0.008334331,0.0006113368,0.0006197577,0.0003406043,0.03282902],"genre_scores_gemma":[0.01559268,0.002854604,0.00030525,0.8093309,0.001756107,0.0003730964,0.003149045,0.000259409,0.1663789],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.4411779,"threshold_uncertainty_score":0.9999284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01404670757404101,"score_gpt":0.2408466630210687,"score_spread":0.2267999554470277,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}