{"id":"W3157249316","doi":"10.1101/gr.272310.120","title":"The genomic basis of evolutionary differentiation among honey bees","year":2021,"lang":"en","type":"article","venue":"Genome Research","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; Instituto de Salud Carlos III; National Institute on Aging; National Institute of Food and Agriculture; National Science Foundation; National Institutes of Health; Ministerio de Economía y Competitividad; Chiang Mai University; U.S. Department of Agriculture","keywords":"Biology; Honey bee; Eusociality; Evolutionary biology; Phylogenetics; Genome; Lineage (genetic); Genetics; Zoology; Gene; Hymenoptera","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000126121,0.0001144954,0.0002125393,0.0008942305,0.0002253452,0.0004301297,0.0001649564,0.0003121021,0.0009251314],"category_scores_gemma":[0.0003139728,0.0001451846,0.0002249515,0.000638469,0.0002832945,0.0002135904,0.0004426394,0.0002722605,0.0002459039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001481721,"about_ca_system_score_gemma":0.00007351678,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005475829,"about_ca_topic_score_gemma":0.001307714,"domain_scores_codex":[0.999816,0.00002550776,0.00001229128,0.00009340448,0.00002687018,0.00002599494],"domain_scores_gemma":[0.9997919,0.00006459291,0.00006467877,0.00002572629,0.00002012518,0.00003291741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002983098,0.00003081875,0.09264402,0.0001269331,0.0001844004,0.0003131669,0.0007782379,0.0002749854,0.8862544,0.0006458794,0.0001259336,0.01832289],"study_design_scores_gemma":[0.00000812905,0.00004181881,0.9937641,0.0000109802,0.00004331805,0.0002631281,0.0001709379,0.0003635818,0.003697262,0.0004116,0.001217593,0.000007504246],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980162,0.0006222589,0.0004668291,0.00002885767,0.000002095402,0.000003403169,0.0002230959,0.00001370461,0.0006234398],"genre_scores_gemma":[0.998357,0.0002574917,0.0004048377,0.00005043548,0.000005237299,0.000006011372,0.0006646882,0.000008185249,0.0002459622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009251314,"threshold_uncertainty_score":0.003094852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02711930890065783,"score_gpt":0.3078745866809922,"score_spread":0.2807552777803343,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}