{"id":"W3157263995","doi":"10.1111/pbi.13600","title":"The pan‐genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content","year":2021,"lang":"en","type":"article","venue":"Plant Biotechnology Journal","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université Laval","funders":"Genome Canada","keywords":"Biology; Genome; Gene; Genetics; Structural variation; Genome size; Reference genome; Glycine soja; Genomics; Comparative genomics; Glycine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004130172,0.000127465,0.0001773313,0.00001171579,0.0007026544,0.00007288273,0.0005615195,0.000240749,0.00005714921],"category_scores_gemma":[0.0001758982,0.00003712716,0.0001175932,0.0003352673,0.000235046,0.00004098766,0.0001096155,0.0003800854,0.00000375074],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002320482,"about_ca_system_score_gemma":0.00002910067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000422936,"about_ca_topic_score_gemma":0.0002533981,"domain_scores_codex":[0.9987291,0.0002033351,0.0003872628,0.0001962465,0.0001969462,0.0002871805],"domain_scores_gemma":[0.9991512,0.0001324747,0.0003090627,0.0001408742,0.0002057652,0.00006063661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002675952,0.00006248359,0.008727384,0.000001120832,0.00004092215,0.00001398674,0.00004377133,0.000001426894,0.9806656,0.000597248,0.0001533693,0.009665974],"study_design_scores_gemma":[0.0002487277,0.0002191505,0.4007368,0.00002739774,0.00002036281,0.0007983797,0.002075668,0.00003521101,0.5850938,0.001582542,0.0090251,0.0001367972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866556,0.00122514,0.00001544168,0.01158239,0.0002265469,0.0001269864,0.00009703586,0.00003102528,0.0000398551],"genre_scores_gemma":[0.9985612,0.0007517464,0.000117437,0.0002120198,0.0001054105,0.000003786636,0.00004161278,0.000001357378,0.0002054026],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3955717,"threshold_uncertainty_score":0.540432,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04388976181210761,"score_gpt":0.212976653460761,"score_spread":0.1690868916486534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}