{"id":"W3157569124","doi":"10.1128/jcm.00044-21","title":"Application of Four Genotyping Methods to Mycoplasma bovis Isolates Derived from Western Canadian Feedlot Cattle","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"Beef Cattle Research Council; Ministry of Agriculture - Saskatchewan","keywords":"Multilocus sequence typing; Biology; Genotyping; Phylogenetic tree; Genetics; Typing; Genotype; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001598359,0.0008471431,0.0005439283,0.002115192,0.001559552,0.0009309447,0.000706171,0.0007347941,0.001369927],"category_scores_gemma":[0.003314396,0.0002885311,0.0005676069,0.001934205,0.0004622148,0.000196256,0.0005077348,0.0004743211,0.0004618316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002601145,"about_ca_system_score_gemma":0.002861821,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.4662949,"about_ca_topic_score_gemma":0.7660735,"domain_scores_codex":[0.9985157,0.0001440343,0.0001234765,0.0003539927,0.0005994551,0.0002634788],"domain_scores_gemma":[0.9986368,0.0002945776,0.0002055009,0.0001315445,0.0006003832,0.0001312335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008651502,0.0002516762,0.3246376,0.0006756969,0.000336723,0.0004786134,0.002299777,0.001475879,0.502481,0.0004925143,0.001557932,0.1644475],"study_design_scores_gemma":[0.00004314518,0.0004369331,0.8377827,0.0001167086,0.0003665735,0.0008741845,0.001065641,0.003984876,0.1383792,0.0002291407,0.01664301,0.00007791569],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9434123,0.001566921,0.03711843,0.0002400327,0.0000753801,0.0008374273,0.006410597,0.0004965313,0.009842438],"genre_scores_gemma":[0.8222609,0.0008538307,0.1632323,0.0001460289,0.00001425724,0.0002777306,0.005817014,0.0001064591,0.007291589],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5337051,"threshold_uncertainty_score":0.9271616,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06182816727969697,"score_gpt":0.4107799546062455,"score_spread":0.3489517873265485,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}