{"id":"W3158243097","doi":"10.1021/acsomega.1c00526","title":"Genomic and Metabolomic Analysis of the Potato Common Scab Pathogen <i>Streptomyces scabiei</i>","year":2021,"lang":"en","type":"article","venue":"ACS Omega","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"H2020 Marie Skłodowska-Curie Actions; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; China Scholarship Council","keywords":"Metabolomics; Biology; Metabolite; Streptomyces; Common scab; Computational biology; Pathogen; Whole genome sequencing; Genome; Microbiology; Genetics; Gene; Biochemistry; Bacteria; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007982623,0.00008396996,0.0002235835,0.0000113015,0.0001100051,0.00002981928,0.0001769123,0.00004229021,0.00002275652],"category_scores_gemma":[0.000015272,0.00002929153,0.0001375329,0.0006644325,0.00006462786,0.0000301436,0.000110477,0.00004259798,0.000003210414],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005862084,"about_ca_system_score_gemma":0.00001245927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004993706,"about_ca_topic_score_gemma":0.001368425,"domain_scores_codex":[0.9993089,0.00007324178,0.0001544294,0.000189617,0.0001323021,0.0001415235],"domain_scores_gemma":[0.9996372,0.0000965517,0.00007658085,0.0000951968,0.00003903958,0.00005544136],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000009139141,0.000032533,0.2342369,0.000004193737,0.0001791053,0.000004419367,0.00002351656,0.00001788404,0.7595934,0.00005742993,0.0001378761,0.005703632],"study_design_scores_gemma":[0.00005349844,0.000009697111,0.9649214,0.000006076879,0.0004602506,0.000002784946,0.0001351126,0.0000358855,0.02818457,0.0001647818,0.005944064,0.00008184308],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930515,0.005566895,1.67673e-7,0.0005061016,0.00003056116,0.00005167666,0.0004994903,0.000009019636,0.0002846444],"genre_scores_gemma":[0.9985057,0.0008537105,0.00001846021,0.0002810916,0.00002793475,0.000003047949,0.00009222893,5.191429e-7,0.0002172747],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7314088,"threshold_uncertainty_score":0.1194474,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008575419552949368,"score_gpt":0.1994559258421398,"score_spread":0.1908805062891904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}