{"id":"W3158243097","doi":"10.1021/acsomega.1c00526","title":"Genomic and Metabolomic Analysis of the Potato Common Scab Pathogen <i>Streptomyces scabiei</i>","year":2021,"lang":"en","type":"article","venue":"ACS Omega","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"H2020 Marie Skłodowska-Curie Actions; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; China Scholarship Council","keywords":"Metabolomics; Biology; Metabolite; Streptomyces; Common scab; Computational biology; Pathogen; Whole genome sequencing; Genome; Microbiology; Genetics; Gene; Biochemistry; Bacteria; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008997555,0.0004084757,0.0003573542,0.0005244924,0.0002040865,0.0003742856,0.0001209867,0.0002424681,0.0008811649],"category_scores_gemma":[0.0001188937,0.0001257172,0.0003886711,0.0005729874,0.0001377179,0.0001831862,0.0002653269,0.000425108,0.0003564898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002121318,"about_ca_system_score_gemma":0.0003304459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001952028,"about_ca_topic_score_gemma":0.00378742,"domain_scores_codex":[0.9998837,0.00001004298,0.000005511513,0.00004695942,0.00003410566,0.00001975545],"domain_scores_gemma":[0.9999093,0.00001112351,0.00002837748,0.00000862383,0.00001817562,0.0000245085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009817137,0.00001924572,0.0007950896,0.00004294025,0.00001234812,0.00004366711,0.00001482968,0.0000615283,0.9973249,0.0000185551,0.00005378768,0.001514761],"study_design_scores_gemma":[0.00003408875,0.001110194,0.3826385,0.00004620122,0.0002906946,0.001054742,0.0005852275,0.003185033,0.5998566,0.0003017592,0.01084509,0.00005180415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9710054,0.001403806,0.005102244,0.0002284777,0.00002944752,0.00009309666,0.01994768,0.0001837541,0.002006068],"genre_scores_gemma":[0.9498572,0.001036371,0.009590367,0.0002145676,0.00002020552,0.00008024208,0.035896,0.00009549917,0.003209587],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001952028,"threshold_uncertainty_score":0.003881395,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008575419552949368,"score_gpt":0.1994559258421398,"score_spread":0.1908805062891904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}