{"id":"W3158546620","doi":"10.1128/jvi.00318-21","title":"Vaccinia Virus Gene Acquisition through Nonhomologous Recombination","year":2021,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates - Health Solutions; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Homologous recombination; Non-homologous end joining; Genetics; Gene; FLP-FRT recombination; Genetic recombination; Molecular biology; Recombination","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004525141,0.000120325,0.0003552856,0.0001274653,0.0001199958,0.00001337676,0.0002186579,0.0003480837,0.00237582],"category_scores_gemma":[0.0002459079,0.0001039379,0.0001595181,0.000145113,0.0001053645,0.0001982525,0.00008668896,0.0005633853,0.000556245],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006817887,"about_ca_system_score_gemma":0.0001985757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002501339,"about_ca_topic_score_gemma":0.00001990202,"domain_scores_codex":[0.9983767,0.000560604,0.0004746654,0.0001681043,0.00006089126,0.0003590454],"domain_scores_gemma":[0.9989104,0.0001951704,0.0003187355,0.0001881253,0.0003511618,0.00003636061],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006202916,0.0002531976,0.000419946,0.000005311394,0.0002202292,0.0004830211,0.0001889607,0.000007800117,0.9821062,0.0005515674,0.008477785,0.006665696],"study_design_scores_gemma":[0.002981051,0.001403851,0.02100244,0.00001307414,0.00006342548,0.008557496,0.00006635411,0.00000340553,0.8907298,0.00652729,0.06851801,0.0001337732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9847214,0.008540411,0.001156008,0.002487897,0.001492544,0.00005711777,0.00001810135,0.00001526098,0.001511276],"genre_scores_gemma":[0.9953411,0.001866621,0.0004832038,0.001274746,0.0001561949,0.000002654725,0.00004852724,0.00001278296,0.000814161],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09137636,"threshold_uncertainty_score":0.9985362,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01621679613489341,"score_gpt":0.2825456348552147,"score_spread":0.2663288387203213,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}